| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2192 |
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| Symbol | |
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| ID | 5456831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2371827 |
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| End bp | 2372507 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877771 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001413463 |
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| Protein GI | 154252639 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCACCT TTTCCATGCC GGGCGATGCC CCTTACTCCT ACACCCCTCC CTTGGAGCCC
TACCTCGTGG TTCTTCACAA GGATGACGAG ATTCTTGTGT TGGCAAAGCA GAGTGGCTTG
CTCTGCGTCG CTGGAAGGCC GGTCGAGCAC AGTGACTGTC TCGAGAGCCG CGCACGCGCG
ACATTTCCCA ACGCGCGCAT CGTCCATCGG TTGGACCGGG ATACTTCGGG TGTCATCATC
ATGGCAATGA CCCCGGCAGC ACATCGGCAT CTGGGATTGC AGTTCGAACG ACGGAAAATT
CGTAAAACCT ATCTGGCCCG CGTGTGGGGC CAGCTTGCGC AGGAATACGG CCGGGTGGAC
CTGCCCCTTG CGTGCCACTG GCCGAACCGG CCCAAGCAGA TGGTGGATGT GGACGCCGGA
CGACCGGCGC AGACCGACTG GGAAGTTGTG GAGCGCGAAA AGAATGCGAC GCGGGTGCGA
CTCTCGCCGC TTACCGGCCG GTCGCATCAG TTGCGCGTTC ACATGCTGAG CCTCGGCCAT
CCAATCCTTG GGGACAGCTT CTATGCGACG GGAGAAGCTT TTGCCGCTGC GGACCGCCTG
CAACTGCATG CGGAAACACT GACCTTCCAC CATCCGGCGG ACGGTCGCAT TTGCCGCTTC
GCTGTCCCCT GCCCGTTCTA G
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| Protein sequence | MSTFSMPGDA PYSYTPPLEP YLVVLHKDDE ILVLAKQSGL LCVAGRPVEH SDCLESRARA
TFPNARIVHR LDRDTSGVII MAMTPAAHRH LGLQFERRKI RKTYLARVWG QLAQEYGRVD
LPLACHWPNR PKQMVDVDAG RPAQTDWEVV EREKNATRVR LSPLTGRSHQ LRVHMLSLGH
PILGDSFYAT GEAFAAADRL QLHAETLTFH HPADGRICRF AVPCPF
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