Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2164 |
Symbol | |
ID | 5454579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2343868 |
End bp | 2345316 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640877741 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001413435 |
Protein GI | 154252611 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.317837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCCGA GCTCTTCGCC GGTCTTCACA TTGATGATGA TGATGGCCTC GGCGCCGTCG CTGCCGACAT GGACGGCGAT GCGCTCTTCA TCGAGCGTGA CGGAGCGGAC GGTCTCGCCC GGCGCGACGG CGATGCGCGA GACGCCGAAT TGGTCGCCCG AGGGCAGCGC CGCCTCGCGG CTGCCCGAAC CGCTGAGCCG CCAGACAAAG GCGGCGATGA CGACCATGAA GCTCAGCACC AGCACAGCCG ACATGATGGC CATGGCGCGC TTCAGCTTGC GAAGGTCCGG CCCGCCGGCT GCGACGGATT GCGGCGCTTC GCGCTGCGAT GTTGTATCCT CGGCCATGAT GTCGATCGCT CCTGAAACGC TGAATGAAAG CCCCCGCGCC GAAGCGGAGA CGCGCGCCGT GACTGTAACG GCGGAGGATG CGGGCGCGCG GCTCGACAAG TATCTCACGG AGGCGCTGGG GGACAAGGGC GAAGGCGACG CGCCCGCAAC GCTCTCTCGC GCGCGGATGC GCCAGCTGAT CGAACAGGGG CAGGTCTCGC GCGAGGAGAA GGCGGGCGCG CCGAAGCTCC TCACCGATCC CTCCTACCGC GTGAAGGCGG GCGAGCGCCT CTCCGTCTCG GTGCCGCCGC CGACGCCCGC AAAGCCCGCG GGACAGGCGA TCCCGCTCGA AATCGTTTAC GAGGATGCCG ACCTCATCGT GGTGATGAAG CCGGCGGGGC TCGTCGTCCA TCCCGCGCCC GGCAACCCGG ACATGACGCT GGTGAACGCG CTGGTCGCGC ATTGCGGCGA GACGCTTTCG GGCATCGGCG GCGAGAAGCG GCCGGGCATC GTCCACCGGC TCGACAAGGA GACGAGCGGG CTGATGGTCG TCGCGAAGAC GGACCGCGCG CATCAGGGCC TCTCCGCGCA ATTCGCCGCG CATGGCCGCG ACGGCAAACT GACGCGCGCC TATACGGCGC TCACATGGGG CGTGCCGCAG ACGCGCAAGG GAACAGTCGA CGCGAACATC GCGCGCTCAA GCCATAACCG CTCGAAGATG GCGACGGTGC GCGACCGGGG CGAGGAAACC GGCGGCCGCA TCGCCATCAC GCATTATACG GTGAAGACGG ATTATGCCGA CGGGCTGGTG GCCGAAGTCG AATGCCGCCT CGAAACCGGC CGCACCCACC AGATCCGCGT TCACATGACG GCACTCGGCC ACCCGCTGCT CGGCGACGCG ACCTATGGCA CGGGGATGAA AAGCCGCAAA TCGAAACTCT CGCCGGAAGC GCAAGCCGCG CTGGAACGGC TGAACCGCCA GGCGCTGCAC GCGCATCATC TGGGCTTTGA GCATCCGGTG GCAGGAGAGA AGATGAGCTT TGATGCTCCG TTGCCGGAGG ATATGCAGGA GCTGGTGAGG GCGTTGGAGG GGGTGAGGGA CGGTTTGCGC AGCAAATGA
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Protein sequence | MRPSSSPVFT LMMMMASAPS LPTWTAMRSS SSVTERTVSP GATAMRETPN WSPEGSAASR LPEPLSRQTK AAMTTMKLST STADMMAMAR FSLRRSGPPA ATDCGASRCD VVSSAMMSIA PETLNESPRA EAETRAVTVT AEDAGARLDK YLTEALGDKG EGDAPATLSR ARMRQLIEQG QVSREEKAGA PKLLTDPSYR VKAGERLSVS VPPPTPAKPA GQAIPLEIVY EDADLIVVMK PAGLVVHPAP GNPDMTLVNA LVAHCGETLS GIGGEKRPGI VHRLDKETSG LMVVAKTDRA HQGLSAQFAA HGRDGKLTRA YTALTWGVPQ TRKGTVDANI ARSSHNRSKM ATVRDRGEET GGRIAITHYT VKTDYADGLV AEVECRLETG RTHQIRVHMT ALGHPLLGDA TYGTGMKSRK SKLSPEAQAA LERLNRQALH AHHLGFEHPV AGEKMSFDAP LPEDMQELVR ALEGVRDGLR SK
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