Gene Plav_2126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2126 
Symbol 
ID5456813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2307190 
End bp2309115 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content63% 
IMG OID640877703 
ProductATP-dependent metalloprotease FtsH 
Protein accessionYP_001413397 
Protein GI154252573 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.450794 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCAATT TCAAGAATTT CGCAGTCTGG GTGCTGGGGG CGCTGTTGCT GATCGCCCTC 
TTCAATCTTT TCCAGAGCCC CGCGCCGCAG GATGGCGCTG GCACGGAGAT TACCTTCTCG
CGTCTCTTGT CCGACGTCGA CGCCGGTAGC GTCAGCGATG TGACGATCCA GGGCGAGAAG
ATCACCGGTA CCTATTCGGA TGGACGCAAG TTCTCCACCT ATGCGCCTTC GGATCCCTCG
CTGGTCGATC GCCTCTACAA CAAGGGTGTC GCGATCACAG CGAAACCTTC CGACGAGAAC
GTGCCCTCGT TGCTGGGCGT CCTCGTCTCG TGGTTTCCGA TGCTGCTGCT CATCGCAGTG
TGGATTTTCT TCATGCGCCA GATGCAGGGT GGCGGCGGCA AGGCCATGGG CTTCGGCAAG
TCCAAGGCGA AGCTCCTCAC CGAGCGTCAT GGCCGCGTGA TGTTCGACGA TGTCGCGGGT
ATCGACGAAG CGAAGGACGA TCTCACCGAG ATCGTCGACT TCCTGCGCGA TCCGGCCAAG
TTCCAGCGCC TCGGCGGACG TATCCCGAAG GGCGTGCTGC TCGTCGGTCC TCCCGGCACG
GGTAAGACGC TTCTTGCGCG CGCCATCGCG GGCGAGGCGA ACGTACCCTT CTTCACGATT
TCCGGCTCCG ACTTCGTCGA GATGTTCGTG GGCGTCGGTG CATCTCGTGT ACGCGACATG
TTCGAGCAGG CGAAGAAGAA TGCGCCCTGC ATCATCTTCA TCGACGAAAT CGACGCCGTC
GGCCGTCATC GCGGTGCCGG TCTCGGTGGC GGCAATGACG AGCGCGAGCA GACGCTGAAC
CAGTTGCTGG TCGAGATGGA TGGTTTCGAG CCGAATGAGG GCATCATCCT CATCGCCGCG
ACCAACCGGC CGGACGTGCT CGATCCCGCG CTGCTGCGGC CGGGCCGCTT CGACCGTCAG
GTCGTCGTGC CGAACCCGGA TGTCGTCGGT CGCGAAAAGA TCCTGAAGGT TCACATGAAA
AAGGTGCCGC TGGCGCCGGA TGTCGAGCCG CGTACGATTG CGCGCGGGAC GCCGGGCTTC
TCGGGTGCCG ATCTCGCAAA CCTCGTCAAC GAGGCTGCGC TTATGGCTGC GCGCCGCGGC
AAGCGCCTCG TCACCATGGC GGAGTTCGAG GACGCAAAAG ACAAGGTCAT GATGGGCGCG
GAACGCCGCT CCATGGTCAT GACGGAAGAA GAGAAGAAGC TGACCGCCTA TCACGAAGGC
GGCCACGCGC TCGTTGCGCT TCACATGCCG GCTTCCGATC CGATCCACAA GGCAACCATC
ATTCCGCGCG GCCGTGCGCT TGGTATGGTC ATGCGCCTGC CGGAGCGGGA CCAGATTTCG
GTCACGCGCG AAAAGCTCCA GGCCGACCTC GCGGTCGCGA TGGGCGGGCG TATCGCCGAA
GAGCTGATCT TCGGTCACGG CAAGGTGACG TCCGGTGCCT CTTCCGACAT TGCGATGGCG
ACGAAGATGG CGAAGGCGAT GGTTACGCGC TGGGGCATGA GCGACAAGCT CGGGCCGCTT
GCCTATGGCG AGAATGAGGA AGAAGTATTC CTCGGCCATT CCGTGGCCCG CCAGCAGAAC
ATGTCGGAAG AAACGCAGCG CCTGATCGAC TCCGAAGTCC GGGTGATCGT CGAAGGCGGC
TACAACACCG CCAAGCAGGT CCTGACGGAT CACATCGATG AGCTTCATAC GATCGCGAAG
GGTCTCCTCG AATATGAGAC GCTTTCGGGC GACGAGATCA TCAACCTGCT CAAGGGCGAG
CCGCCGGTGC GCGATCGCGG CGAGCCGACG AAGCCGGTCG AAGGGCCGAT TTCGGCAGTG
CCGGTCACGG GCAACAAGCC GAGCGATGGC CCGCTGGGTG CGCCGCCTGC TCCTCAGGGG
ACATAA
 
Protein sequence
MSNFKNFAVW VLGALLLIAL FNLFQSPAPQ DGAGTEITFS RLLSDVDAGS VSDVTIQGEK 
ITGTYSDGRK FSTYAPSDPS LVDRLYNKGV AITAKPSDEN VPSLLGVLVS WFPMLLLIAV
WIFFMRQMQG GGGKAMGFGK SKAKLLTERH GRVMFDDVAG IDEAKDDLTE IVDFLRDPAK
FQRLGGRIPK GVLLVGPPGT GKTLLARAIA GEANVPFFTI SGSDFVEMFV GVGASRVRDM
FEQAKKNAPC IIFIDEIDAV GRHRGAGLGG GNDEREQTLN QLLVEMDGFE PNEGIILIAA
TNRPDVLDPA LLRPGRFDRQ VVVPNPDVVG REKILKVHMK KVPLAPDVEP RTIARGTPGF
SGADLANLVN EAALMAARRG KRLVTMAEFE DAKDKVMMGA ERRSMVMTEE EKKLTAYHEG
GHALVALHMP ASDPIHKATI IPRGRALGMV MRLPERDQIS VTREKLQADL AVAMGGRIAE
ELIFGHGKVT SGASSDIAMA TKMAKAMVTR WGMSDKLGPL AYGENEEEVF LGHSVARQQN
MSEETQRLID SEVRVIVEGG YNTAKQVLTD HIDELHTIAK GLLEYETLSG DEIINLLKGE
PPVRDRGEPT KPVEGPISAV PVTGNKPSDG PLGAPPAPQG T