| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2096 |
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| Symbol | |
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| ID | 5455368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2278311 |
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| End bp | 2280161 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640877673 |
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| Product | lipid ABC transporter ATPase/inner membrane protein |
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| Protein accession | YP_001413367 |
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| Protein GI | 154252543 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.163444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0014118 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGATA TATCAAACCC GGTCGTCGAG GCCATCGAGG AAGAAGCGCA GCGGCGCAAG
CCCGCAAAGG CCGTGAGGCC TATCCTCCGC TTGATGCCTT TCCTTGTGCA TTACCGGGGA
ATGCTGACCC TCGCCCTTGT ATCGCTTGTC CTCGCCACGC TCGCCACGCT CGCCATTCCA
ATGGCCGGCC GACGCCTGAT CGACAATGGG TTCAATCGCG AGAGCGCCGC CTTCGTCGAC
CAGTATTTCA TTGCACTTGT TCTCGTTGCG CTCGTTCTCG GCGTCGCCAG CGCCGCCCGC
TTCTTCTTCG TGAGCTGGAT CGGGGAGCGT GTGGTCGCGG ATATAAGGCG CGCGGTTTAC
GAACATGTCC TGCAGCTCTC GCCGGCATTC TTCGAAGTAA CGCGGACAGG TGAGGTTCTC
TCGCGTCTTA CCGCCGATAC GACGCTCATC AAGACGGTTG TGGGCTCATC CGCCTCGATC
GCGCTCCGTA ACATCTTTCT GTTCTTCGGC GCCGGCGCGA TGATGGCGGC GACGAGCCCT
TATCTTTCCA GCCTCGTCCT CCTTGCCATT CCCGCCATTC TTCTGCCGCT CATCGTGTTC
GGCCGCTGGG TGCGGCGGCT TTCCCGCTCC GCGCAGGACA GGCTGGCCGA TACCAGTGCC
TTCGGAACGG AAAGCCTCAA CGCCATCCAG ATCGTCCAGG CGTTCACTCA TGAGCCGATC
GACAATGAGC GCTTCGGCAG CACGGTCGAG AGCGCCTTCG ATACCGCACG CTCCCGCATT
CTTGCCCGAG CCATCCTTAC GGCCCTGATC TTTTTCTTCG GCTTGTCCAG CGTCGTCGGC
GTGCTCTGGG TCGGCGCGAA TGCGGTCCTG GCCGAGACGA TGACAGGCGG CGAGCTCCTC
GAATTCATCC TCTATGCGGT GTTTGCGGCC TCGGCCCTCG CTGCGCTCTC CGAAATCTGG
GGCGATATTC AGATGGCGGC GGGCGCGACG GAGCGCCTGA TGGAGCTGCT CGACGTCGAA
CCGGAAATCG CCGCCCCCGC GCAGCCTCAG GCCTTGCCGG CACCGCGCGG CGAAATCGCC
TTCGACAATG TCACTTTCGC CTATCCGACA CGGCCTCATG TGTCGGCTTT GCACGGCTTT
TCGCTTGCGG TGGCGCCCGG TGAGACGGTT GCGCTTGTTG GACCCTCGGG CGCGGGCAAA
AGCACTGTCT TCCAGCTTCT CCTGCGCTTC TACGATCCGC AGTCGGGTCA TGTGCGGCTC
GATGGTGTGG ATATCCGAGA TGCGGAGCCG CGCGACGTTC GCGGCCGCCT CGCCGTGGTG
CCGCAAGAGA CGGTCGTGTT CGGCACCACC GTCGTCGAGA ACATCCGGTA TGGCCGTCCC
GAAGCAAGCG AGGATGAAGT GCGCGCGGCG GCGCGGGCGG CGCGGATAGA TGACTTCATC
ATGCAGTTGC CCGATGGCTA TCAGACGCAG GTGGGCGAGC GCGGAGTGAC GCTTTCCGGC
GGTCAGCGGC AGCGCATCGC CATTGCCCGT GCCATTCTCC GCAACGCACC GGTATTGCTT
CTGGACGAGG CGACGAGCGC GCTCGATGCC GAAAGCGAGA CACTTGTGCA GCAGGCGCTG
GAAGGTCTGA TGGCGGACCG GACGACGCTG GTTATTGCGC ATCGTCTCGC CACCGTTTTG
AAGGCCGATC GCATCGTGGT GATGGAAGAG GGGCGCGTGG TCGCCTCGGG CACGCATGAC
GAGCTTGTCA GGCAGGGTGG ACTTTATGCC CGCCTCGCGC GGCTGCAATT CGCAGGTGAT
CGGGATATGC TCGACGAAAA CGCGCGGGCG AATGCCGGTG CTGCCGTTTA A
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| Protein sequence | MSDISNPVVE AIEEEAQRRK PAKAVRPILR LMPFLVHYRG MLTLALVSLV LATLATLAIP
MAGRRLIDNG FNRESAAFVD QYFIALVLVA LVLGVASAAR FFFVSWIGER VVADIRRAVY
EHVLQLSPAF FEVTRTGEVL SRLTADTTLI KTVVGSSASI ALRNIFLFFG AGAMMAATSP
YLSSLVLLAI PAILLPLIVF GRWVRRLSRS AQDRLADTSA FGTESLNAIQ IVQAFTHEPI
DNERFGSTVE SAFDTARSRI LARAILTALI FFFGLSSVVG VLWVGANAVL AETMTGGELL
EFILYAVFAA SALAALSEIW GDIQMAAGAT ERLMELLDVE PEIAAPAQPQ ALPAPRGEIA
FDNVTFAYPT RPHVSALHGF SLAVAPGETV ALVGPSGAGK STVFQLLLRF YDPQSGHVRL
DGVDIRDAEP RDVRGRLAVV PQETVVFGTT VVENIRYGRP EASEDEVRAA ARAARIDDFI
MQLPDGYQTQ VGERGVTLSG GQRQRIAIAR AILRNAPVLL LDEATSALDA ESETLVQQAL
EGLMADRTTL VIAHRLATVL KADRIVVMEE GRVVASGTHD ELVRQGGLYA RLARLQFAGD
RDMLDENARA NAGAAV
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