| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1996 |
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| Symbol | |
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| ID | 5453713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2180080 |
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| End bp | 2181012 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640877572 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001413267 |
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| Protein GI | 154252443 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000014768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 92 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCTC ATCGGACATC GCGGGATTTC AACCTGCGCA CAGGATTCTG CGGATTTCTG
GCAGTGCTGA TTGCAGCGAC TGCCAGCCCG CATGCCGCGT TCAGCCGCGA GAGCGACGGC
GCCGTGCACG ATCCTGTGAA TGCCTGCGAG GACGCGGCCA TCCACCACGA ACAGGCGAAC
GGCCTCCCCC GCGCATTGCT GGCGGCGGTA GCGCTTGCCG AGTCCGGCCG CTACAGCCCG
ACGACGCGCA AGGCACGCGC CTGGCCCTGG ACCATCAACG CAGAGGGGCG CCCTTACTAT
TTCAAGACGA AGCAGGAAGC CATTGCGACG ACGCAACGCC TCCTCGACAG CGGCATGCGC
TCCATCGACA TCGGCTGCAT GCAGGTCAAC CTTCGCTACC ATCCCGACGC CTTCATCAGC
CTCGAAGACG GCTTCGACCC GATGACGAAC GTAGCCTATG GCGCGGAGTT TCTGATGCGC
CTGCATGAGC GGGCTGGCTC ATGGGAGAAA GCTGTCGCCC ACTACCATTC GCAGACGGCC
TCACGCGGCG GACGCTATTT CGCACGTGTC ATCCGGATTT GGGAAAACGA ACGCACGCGT
GTCGCACAGC GCAGCTATGC TGCGGCGCCG CCGAAGATCG ACGTCTCCGA CTTCCTGAAG
CCGGCGGTCG GACCGGGGGT GAGCGTGCTC GCAATGAACG AAGCCGCAGA GCCGACAGCC
ATCTCCTATC GCCCGGCACC GAAAGTTCTC GACGCGGCGC CGGAACAGAA TGTGCGTGAG
ACGGCGAGCG CCGCAGTCGG CTTGCGCCTC TCGATTGCCG ATCAAGATGT GGCCGAGGCC
GCGAGCACAA CCGAAAGGCG GGAGCCGCGC GTACTCGACC CGATGCCTGC CGGACCGACA
CGCGTCGCGG ACGTTTCGAT ACCGGGCGCT TAA
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| Protein sequence | MASHRTSRDF NLRTGFCGFL AVLIAATASP HAAFSRESDG AVHDPVNACE DAAIHHEQAN
GLPRALLAAV ALAESGRYSP TTRKARAWPW TINAEGRPYY FKTKQEAIAT TQRLLDSGMR
SIDIGCMQVN LRYHPDAFIS LEDGFDPMTN VAYGAEFLMR LHERAGSWEK AVAHYHSQTA
SRGGRYFARV IRIWENERTR VAQRSYAAAP PKIDVSDFLK PAVGPGVSVL AMNEAAEPTA
ISYRPAPKVL DAAPEQNVRE TASAAVGLRL SIADQDVAEA ASTTERREPR VLDPMPAGPT
RVADVSIPGA
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