Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1987 |
Symbol | |
ID | 5454896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2170469 |
End bp | 2171320 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640877563 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001413258 |
Protein GI | 154252434 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 98 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAAAG CGACTGTCCT CAGCGAAGGT GCCGTTTCGG CGGTCGATTA CCGGTGCCCG GCGGGCCCGG CCGGGGCGCC CTATGCCGAA TGCCATGAGG TCTTCTCGAT TTCCTATGTA CGGAAAGGCT CGTTCGGCTA CCGGGCGGGC GGGCAGACCC TCGAGATGGT GGCGGGCTCG GTGCTGGTGG GGCACCGGGG GGATGAATAT ATCTGCACAC ACGACCACCA TGTCTGCGGC GACGAATGCC TGGCCTTCCG GCTCGACGAG GAACTGGCCG ACACGGTGAG CGGCCGGCCG GAGCTGAGGC GGCTCGCGGC GCTGCCGCCA CTGCCGGAAA TGATGGTGCT GGGGGAACTG GCGCAGGCCG CCGCCGAGGG GCGGAGCGAC ATGGGTCTGG ACGAGGCGGG GCTGATGTTT GCCGGCCGCT TTGCGGAGAT CGCCACAGGC CGCAAGGCAG GCAAGGTGAC GGCGAGCGCG CGGGACAGGA AACGCGCCGT CCACGCCGCC ATGTGGATGG ATGAATATGC ACACCGGCAA ATCGGCCTTG AAGGCGCGGC GCGGGAAGCG GGCCTCAGCC TCTATCACTT TCTCCGCACC TTCACGAAAG TGCTGGGCGT GACGCCGCAT CAATATCTCC TGCGCGCGCG GCTGCGCCGC GCGGCAAGCC TGCTGGCCGA CAGGGAACGC TCCGTCACCG ACATTGCCTA TGATGCCGGC TTCGCCGACC TGTCGAATTT CATTCGCACC TTCCGCCGCG CGGCGGGAAT TCCGCCCGGC CGCTTCCGCG AGGCTGCGCG GGGCGAGCGC AATTTACTCC AAGCGAGATT GGCGCCGCCC GCCGCAAAGT GA
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Protein sequence | MVKATVLSEG AVSAVDYRCP AGPAGAPYAE CHEVFSISYV RKGSFGYRAG GQTLEMVAGS VLVGHRGDEY ICTHDHHVCG DECLAFRLDE ELADTVSGRP ELRRLAALPP LPEMMVLGEL AQAAAEGRSD MGLDEAGLMF AGRFAEIATG RKAGKVTASA RDRKRAVHAA MWMDEYAHRQ IGLEGAAREA GLSLYHFLRT FTKVLGVTPH QYLLRARLRR AASLLADRER SVTDIAYDAG FADLSNFIRT FRRAAGIPPG RFREAARGER NLLQARLAPP AAK
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