| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1885 |
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| Symbol | |
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| ID | 5454500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2044783 |
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| End bp | 2045523 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877462 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001413157 |
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| Protein GI | 154252333 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0593974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCCCA TTTCAGACGA CAATCCCGAA CCGGGGACGC CCATCGTTAC CTGGGCGATC
ATCGCCGCCT GTGTCGGTGT GTTCTTCTGG CAGTTTTCGC AGGCGCCCGG CGCAGCGGAG
CTTGCGGTCT ATCAGTTCGG CCTCATTCCC GGCGTGCTGT TCGGCTCGAC GGAAATGACG
GATGCGCCGG TGCCCGCATG GGCGACGGTC ATCACCTCCA TGTTCATGCA TGGCGGGCTC
GCCCATCTCG GCGGCAACAT GCTTTATCTC TGGATATTCG GCGACAATAT CGAGCTGGCG
ATGGGCCGGC TTCGCTTCAT CCTGTTCTAT ATCGTCTGCG GCGTGGCCGC CGCGCTGAGC
CATGCGCTGC TGGTGCCGGC TTCCACGGTG CCGCTTGTCG GCGCGAGCGG GGCGATATCC
GGCGTGCTTG GCGCTTATCT GCTGCTTTAT CCGCGCGGGC GCGTGCGCGT TCTCTTCATT
CCCTTTCCAG TCATTCTGCT GCGCACCTTC TATGTGCCGG CGATCATCGT GCTCGGTCTC
TGGTTCGTCA TTCAGGTGGC GAGCGGGCTT GCCAGTCCGG TCGAGGAAGC AGGCGTCGCC
TTCTGGGCGC ATGTCGGCGG CTTTGTCGCC GGCATGGTGC TGGTGCCGTT TTTCAAGCGG
CGCGATGTGC CCTTGTTTCA CAAGGCGGCG CCGAAAGTGT TCGACGGCCG GAACGCGGGC
CGGCGCGGGC CGTGGGGCTA G
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| Protein sequence | MFPISDDNPE PGTPIVTWAI IAACVGVFFW QFSQAPGAAE LAVYQFGLIP GVLFGSTEMT
DAPVPAWATV ITSMFMHGGL AHLGGNMLYL WIFGDNIELA MGRLRFILFY IVCGVAAALS
HALLVPASTV PLVGASGAIS GVLGAYLLLY PRGRVRVLFI PFPVILLRTF YVPAIIVLGL
WFVIQVASGL ASPVEEAGVA FWAHVGGFVA GMVLVPFFKR RDVPLFHKAA PKVFDGRNAG
RRGPWG
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