| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1883 |
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| Symbol | |
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| ID | 5453491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2041728 |
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| End bp | 2043836 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640877460 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001413155 |
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| Protein GI | 154252331 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.118236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGATT TTCGGTTCGC GGCCGGGTTG CTGGCCATTC CTCTGCTGGC ATCCGCCGGT
CCTGCCGCCG CCCAGCAGCC CGAGACGCCG GAAACCGTCA CAACCGGGGA AGCCGGGGAA
CAGCCTCCTC GCGTCTGGGG CCTCGACCAG ATTACGGTCA CGACCACCGG CCTCGGCACG
CCGCGTGCGA CCCATACGGG CAACATCGCC AAAATTTCCG GCGACGATGT CGATTTCATC
GCCCCTGTTC AGCCCGCCGA GGCGCTGAAC CGCCTGCCCG GTGTCGGTAT CCAGCAAGGC
AGCGGTGCCG AACATCTGAC AGCCATCCGC TCGCCCGTCC TTTCGGGCGG CGCGGGCGCG
GGCTCCTTCC TCTACCTGGA AGACGGCGTG CCGATGCGCG CGGCGGGCTT CGCCAATGTG
AACGCGCTGA TGGAGGCGAT GGACGAAGTC TCGGGCGGCA TCGAGGTGGT GCGCGGCCCC
GGCGGCGCGC GTTACGGCTC GAACGCCGAA CACGGCCTCA TCAATTTCCT GAGCCGCCCG
CCCGCGCCCG ACAGCGACGC CGAACTTTCC GCCTGGGCGG GCCCGCACGA TCTCTTCAAG
ATCGCCGGCA CCGCGAGCAA GACCCTGCGC GGCGAAGGTC TCGCCACGCA TGGCTTTCGC
GGCAGCTTCT CCACCCTCCA TGATGGCGGC TTCCGCGCCT CCTCCGGCCT CGATCAGCAG
AAGGCGCGGC TGCGTTATGA TTTCGAAACA CCTGAAACAC GCATGCAGGC AACGCTCACG
GCGGTGAACG TCAATCAGGA AACGGCGGGC TTCGTCGTCG GCCCGGATGC CTACAAGAAC
CCCGCGCTCT ACAAGACCAA TCCCGACCCT GATGCCTATC GAGATGCATG GGCCGTCCGC
GCGGCAGTTC GTATCGAACG CGACCTCGCC GACGATCTCA TGCTCGTGCT GACGCCCTAT
GCGCGAAAAA ACGACATGAA TTTCCTGATG CACTTCATGC CGGGAACGCC CGTCGAGGAA
AACGCACACT GGAGCGGCGG CCTGCTCTCA AGTCTCGTCA AGGATCTCGA CGATGGGCAC
CGTCTCATAT TCGGCTTCGA CAGCGAATAT ACAGACGGGA CGCTTACCGA ATTCCAGGAA
GGCCCAACAG TGGGCATCTC GCCTCAAGGG CTCCATTACG ACTACACCGT GAAGGCGCTC
GTGCTGGCAC CCTATCTCCA TAGCGAATGG CGCCTCTCTC CGGCCACATT GTTCACCGCA
GGCGTCCGTT TCGAATATAC GCGCTACGAC TACACCAACC ACGCGCCGAA CGGCACCTTC
GGCCGCTTTC TTCGCATTCC GAGCCGCGTC GACGAATTTG CGGATGTCAC ACCGAAATTC
GGCGTGCTGC ACAAATTCAA TGACGCCATC ACGGGCTATG TGAACATTGC GCGCGGCTCC
CGCGCGCCCC AGACGACAGA CCTCTATCGC CTGCAGCAAT TCCAGGTGCC GGGCGAGGCG
AAGTCGGAAG AACTCGACAG CATCGAAATC GGTGCACGTG GCGAGTGGAT GGGCGTGAGC
TACGAGACCA ATCTCTTCTA CATGGAAAAG AGCAATTTCT ATTTCCGCGA TGCCAATGGC
TTCAACGTCT CCGACGGCAA GACGGATCAT GCGGGCATAG AGGCGGAGAT CGCCGCCCCC
CTCGGCGCGG GCTTCGACAT CGCCGCCGCC GCCACCTATG CGCGTCACAC CTATGCCTTC
GACAATTTCA TTTCTCCGAC CTCCACCGAA ACCATCCGCG ACGGTGACGA TGTCGATACC
GCCCCGCGCA CCCTCGCCAA TGTCCGCCTC GGCTACGTCT TCAACGAAGG CGCGGGCCGG
GCTGAAATCG AATGGGTCCA CATGGGCGCC TACTGGATGG ATGCCGCCAA CACCGCAAAA
TATGACGGTC ACGACATCTT CAACATCCGC CTCGATTACA CGCTCACCGA GCACCTCGCG
CTGTTCGGCA AGGTCACCAA CGTCTTCGAC ACCCGCTATG CCGATCGTGC CGATTTCGCC
TTCGGCAACG AGCGTTATTT CCCCGGCGAG GACCGTGGCC TGATCCTCGG CGCGTCCTTG
CGTTTCTGA
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| Protein sequence | MIDFRFAAGL LAIPLLASAG PAAAQQPETP ETVTTGEAGE QPPRVWGLDQ ITVTTTGLGT
PRATHTGNIA KISGDDVDFI APVQPAEALN RLPGVGIQQG SGAEHLTAIR SPVLSGGAGA
GSFLYLEDGV PMRAAGFANV NALMEAMDEV SGGIEVVRGP GGARYGSNAE HGLINFLSRP
PAPDSDAELS AWAGPHDLFK IAGTASKTLR GEGLATHGFR GSFSTLHDGG FRASSGLDQQ
KARLRYDFET PETRMQATLT AVNVNQETAG FVVGPDAYKN PALYKTNPDP DAYRDAWAVR
AAVRIERDLA DDLMLVLTPY ARKNDMNFLM HFMPGTPVEE NAHWSGGLLS SLVKDLDDGH
RLIFGFDSEY TDGTLTEFQE GPTVGISPQG LHYDYTVKAL VLAPYLHSEW RLSPATLFTA
GVRFEYTRYD YTNHAPNGTF GRFLRIPSRV DEFADVTPKF GVLHKFNDAI TGYVNIARGS
RAPQTTDLYR LQQFQVPGEA KSEELDSIEI GARGEWMGVS YETNLFYMEK SNFYFRDANG
FNVSDGKTDH AGIEAEIAAP LGAGFDIAAA ATYARHTYAF DNFISPTSTE TIRDGDDVDT
APRTLANVRL GYVFNEGAGR AEIEWVHMGA YWMDAANTAK YDGHDIFNIR LDYTLTEHLA
LFGKVTNVFD TRYADRADFA FGNERYFPGE DRGLILGASL RF
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