| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1868 |
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| Symbol | |
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| ID | 5453534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2028092 |
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| End bp | 2028760 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640877446 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001413141 |
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| Protein GI | 154252317 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.928596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGAACGA AACACGCAGT GCAGATCGGA CCGGCTCGCG CCGGCCGCCA AATGTGGCGG
CCGAACCTGA GGAAGCTAGG CCTGATGGAT GAAGGAAAGG CGCCCGCAGA GGTGTCGCCG
GGAGGTGCCG AAGAGATGGC CGGGCTCATC GCCGCCATCG CCCTTCATGG CGACCGCACC
GCCTTTGCGC GGCTTTTCGG TCATTACGCG CCGCGCGTGA AATCCTATCT GCGGCGCCTC
CGCGTCGACG AGCGGCTCGC CGAGGATCTC GCCCAGGAAG TCATGTTGAC GGTCTGGCGC
AAGGCTTCGC AGTTCGACGG AACCAAAGCC TCCGCCGGCA CCTGGATATT CACCATCGCG
CGCAACCGTT TCATCGACAC GGTGCGCCGC GAGCGCCGCC CGGATTTCGA TCCGTCGGAT
CCGATGCTGC AGCCGGAAGA AGCCCGCCCC GCCGACGAGG AAATGGCGGG CGCCGAGATC
GGCCTTCGGG TCCGCGCCGC ACTCGTCACC CTGCCGCCAG ATCAGGCGGA AGTCGTGGAG
CTGTCCTTCC TCGAAGGTCT GCCCCATTCG GCCATCGCCG AGCGGCTCGA TATTCCGCTC
GGCACCGTGA AGTCGAGATT GAGATTGGCG TTTGCGCGTT TGCGTCCGGC GCTGGAGGAT
CTGAAATGA
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| Protein sequence | MRTKHAVQIG PARAGRQMWR PNLRKLGLMD EGKAPAEVSP GGAEEMAGLI AAIALHGDRT
AFARLFGHYA PRVKSYLRRL RVDERLAEDL AQEVMLTVWR KASQFDGTKA SAGTWIFTIA
RNRFIDTVRR ERRPDFDPSD PMLQPEEARP ADEEMAGAEI GLRVRAALVT LPPDQAEVVE
LSFLEGLPHS AIAERLDIPL GTVKSRLRLA FARLRPALED LK
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