| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1702 |
|---|
| Symbol | |
|---|
| ID | 5454542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1841160 |
|---|
| End bp | 1843316 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640877277 |
|---|
| Product | methylmalonyl-CoA mutase |
|---|
| Protein accession | YP_001412978 |
|---|
| Protein GI | 154252154 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain
[TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0321557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACA AGAAGACGCT CAAGGACTGG GAAGCACAGG TCGCCAAGCA GACCAAAGGT
GCGGGTGTGG AATCGCTTGT CTGGCACACG CCCGAGGGCA TCGATGTCAA ACCGCTCTAC
ACGGCGGAAG ATCTCGAGCG GATTGCCGGC GAGGGCTATG ACACGAACTC GCTTCCGGGT
CTTGCCCCCT ATACGCGCGG CCCTCAGGCG ACGATGTATG CAGGCAGGCC CTGGACCATT
CGCCAATATG CGGGCTTCTC GACAGCGGAA GAGTCCAACG CTTTCTATCG GCGCAATCTG
GCTGCGGGGC AGAAGGGGCT TTCCGTCGCC TTCGATCTGG CGACGCATCG AGGCTATGAC
AGCGATCATC CGCGCGTTAT CGGCGATGTC GGCAAGGCGG GCGTTGCGAT CGACAGCGTC
GAGGATATGA AAATCCTTTT CGATCAGATA CCGCTCAACG AGATGTCGGT CTCGATGACG
ATGAACGGTG CAGTGATACC GATCCTCGCC AATTATGTCG TGGCGGCCGA AGAGCAGGGC
GTGAAGCCGG AGGAACTGTC CGGCACCATT CAGAACGACA TTCTGAAGGA GTTCATGGTC
CGCAACACCT ATATCTATCC GCCCGAGCCT TCGATGCGGA TCATCGCGGA CATTATCGGC
TTTTGCTCGA AGCATATGCC CAGGTTCAAC ACGATCTCGA TTTCCGGCTA TCACATGCAG
GAAGCGGGAG CGACGCAGGT GCAGGAGCTT GCTTTCACGC TTGCCGACGG ACGCGAATAT
GTGCGGGCGG CGCTCGCCGC CGGACTCGAT GTCGATGATT TCGCACCGCG TCTTTCGTTT
TTCTTCGCCA TCGGCATGAA CTTCTTCATG GAAATCGCGA AGCTGCGGGC GGCGCGTTTT
CTCTGGGCGC GGATCATGGC CGAGTTCAAT CCGAAAGATG TGAAATCCTC CATGCTGCGC
ACGCATTGCC AGACTTCGGG CGTGTCGCTT ACCGAACAGG ACCCATACAA CAACGTCATC
CGCACGACCG TTGAAGCCAT GGCCGCGGTG CTGGGCGGCA CACAGTCGCT CCACACCAAT
GCGCTTGATG AAGCGATTGC GCTGCCGACC GATTTCTCCG CCCGTATCGC GCGCAACACG
CAGCTCGTCC TGCAGCATGA AACCGGCATC ACCAATGTGA TCGATCCGCT GGGCGGCTCC
TATTACATCG AGAGCCTGAC GCATGCCATT GCCACCGAAG CTTGGAAGCT CATCGAGGAA
GTGGAAGAGC TCGGCGGTAT GACGAAGGCC GTTGGAACCG GCATGCCGAA GCTCAAGATC
GAGGAAGCGG CGGCACGGCG GCAGGCGAAA GTGGACAAGG GCGAGGAAGT CATTGTCGGC
GTTAACAAGT ATCGCCCGGC GAAGGAGGAT CCGATCGAGA TCCTCGACAT CGACAATGCG
AAGGTTCTTG CTTCCCAGGT CGCGAGGCTG AAGCATGTGC GCGCCACGCG CGATGAAGCC
AAATGCAAGG CGGCGCTCGC GGCGCTTACG GAGGGTGCGC GCGGCAACGG AAATCTTCTG
GCGCTTGCGG TCGATGCGGC GCGCGCGCGC GCAACGGTCG GCGAGATTTC GGATGCGATG
GAAGAGGTTT TCGGACGCCA CCGCGCGGAG ATAAAGTCGA TTTCGGGCGT TTACGCGCAG
GCCTATGAAG GTGATGAGGG CTTCATGCAG ATTTCAAAGG AAATCGATGC GTTCGCGGAA
GCGGAAGGAA GGCGGCCTCG CATGCTCGTC GTGAAGATGG GGCAGGACGG ACATGATCGC
GGTGCCAAGG TTATCGCCAC GGCGTTCGCG GATCTCGGCT TCGACGTCGA TGTCGGGCCG
CTGTTCCAGA CGCCGGAGGA AGCCGCTCGT GACGCCATCG AAAACGACGT CCATGTCATC
GGGATCTCGA GCCTTGCGGC CGGGCACAAG ACATTGGTGC CGGCGCTTGC CAAGGCACTG
AAAGATGAAG GCGCGGACGA CATCCTCATC ATTTGCGGCG GTGTCATCCC GCAGCAGGAT
TACGACTTTC TTAAAAAGGC AGGCGCCTCG GCTATCTTCG GCCCGGGGAC CAATATTCCG
GTTGCCGCGC GCGAAATTCT GGCGCTGATC CGCGAAAAAA GGCAGCAGGC GGCCTGA
|
|---|
| Protein sequence | MADKKTLKDW EAQVAKQTKG AGVESLVWHT PEGIDVKPLY TAEDLERIAG EGYDTNSLPG
LAPYTRGPQA TMYAGRPWTI RQYAGFSTAE ESNAFYRRNL AAGQKGLSVA FDLATHRGYD
SDHPRVIGDV GKAGVAIDSV EDMKILFDQI PLNEMSVSMT MNGAVIPILA NYVVAAEEQG
VKPEELSGTI QNDILKEFMV RNTYIYPPEP SMRIIADIIG FCSKHMPRFN TISISGYHMQ
EAGATQVQEL AFTLADGREY VRAALAAGLD VDDFAPRLSF FFAIGMNFFM EIAKLRAARF
LWARIMAEFN PKDVKSSMLR THCQTSGVSL TEQDPYNNVI RTTVEAMAAV LGGTQSLHTN
ALDEAIALPT DFSARIARNT QLVLQHETGI TNVIDPLGGS YYIESLTHAI ATEAWKLIEE
VEELGGMTKA VGTGMPKLKI EEAAARRQAK VDKGEEVIVG VNKYRPAKED PIEILDIDNA
KVLASQVARL KHVRATRDEA KCKAALAALT EGARGNGNLL ALAVDAARAR ATVGEISDAM
EEVFGRHRAE IKSISGVYAQ AYEGDEGFMQ ISKEIDAFAE AEGRRPRMLV VKMGQDGHDR
GAKVIATAFA DLGFDVDVGP LFQTPEEAAR DAIENDVHVI GISSLAAGHK TLVPALAKAL
KDEGADDILI ICGGVIPQQD YDFLKKAGAS AIFGPGTNIP VAAREILALI REKRQQAA
|
|---|
| |