| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1457 |
|---|
| Symbol | |
|---|
| ID | 5454941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1588778 |
|---|
| End bp | 1589758 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640877030 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001412734 |
|---|
| Protein GI | 154251910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 89 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGAC CTGCCGCCCG CGCGATAGGC GGCGCGCCCG CGCCGGACGA CGCCGCGCGG
ACGATCCCCG CGAGCGGGGA TGCACGGACC GAAATCCGCA ACTGGTATTC CCACCTGATG
GGCGAGCGGC GCATGAGCGA GGCGACGCTC ATCAATTATC ATCGCGACCT GACGCGCTTC
TTTGAATTTC TGGTGGATCA CCTCGGCGGA CCGGCGACGC TGAAGGATCT CGGCCGGCTG
GAGCTGCGCG ACTTCCGCGC CTTTGTGAGC CAGCGCCGCA AGGACGGGCT GCAAAGTCGC
TCCCTGGCGC GGATGCTGTC GAGCGTTCGC TCCTTCTTCC GCTTTCTCGA CCGCACGCAT
GTGCTCTCGA ACGCATCGGC AACGGCGCTG CGCTCGCCGA AGCTGCCGCA CGCCATTCCA
AAACCGCTGA CCGCTGCCGG CGCGCGCGAG CTGCTGGACG AAGCCGAAAT CGCCCATGAG
GAACCCTGGA TCGGGGCGCG CGACATTGCG GTGCTGACAT TGCTTTATGG ATGCGGGCTT
CGCGTGTCGG AGGCGCTGGG CCTCAACCGG AGCGAGGCAC CGCTGAAGGA CGTGCTGCGC
ATCACCGGCA AGGGCGGCAA GGAACGGGTC GTGCCTGTGC TGCCGGCGGC GCGAATGGCT
GTCGACGATT ATCTGAGGCT TTGTCCGCAC GGACTTGCGA AAGACGATCC GCTCTTTGTC
GGCTCACGGG GCGCGCGGCT CGGCCAGCGG CAGGTGCGCG AAACGATGAC GCGCCTCAGG
CGGCGTCTCG GCCTGCCGGA ATCGGCCACG CCCCATGCGC TCCGCCACAG CTTTGCGACG
CATCTTCTGG CGGGCGGCGG CGACCTGCGC TCGATCCAGG AACTGCTCGG CCATGCGAGC
CTGTCGACCA CGCAGATGTA TACGGAAGTC GACGCCGCGC GGCTGCTGGA GGTTTACGAC
AAGGCGAAGA GAAGGCGGTA G
|
|---|
| Protein sequence | MARPAARAIG GAPAPDDAAR TIPASGDART EIRNWYSHLM GERRMSEATL INYHRDLTRF
FEFLVDHLGG PATLKDLGRL ELRDFRAFVS QRRKDGLQSR SLARMLSSVR SFFRFLDRTH
VLSNASATAL RSPKLPHAIP KPLTAAGARE LLDEAEIAHE EPWIGARDIA VLTLLYGCGL
RVSEALGLNR SEAPLKDVLR ITGKGGKERV VPVLPAARMA VDDYLRLCPH GLAKDDPLFV
GSRGARLGQR QVRETMTRLR RRLGLPESAT PHALRHSFAT HLLAGGGDLR SIQELLGHAS
LSTTQMYTEV DAARLLEVYD KAKRRR
|
|---|
| |