| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1427 |
|---|
| Symbol | |
|---|
| ID | 5455174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1558442 |
|---|
| End bp | 1560595 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877000 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001412704 |
|---|
| Protein GI | 154251880 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0004] Ammonia permease
[COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCAGTG CTGCGCAATC CATCGACACC ATCTGGGTTC TGATCTGTAC GATCCTCGTG
ATCCTCATGC AGGCCGGTTT CACCTGTCTT GAATCCGGTC TCGTCAGGGC AAAGAACTCG
ATCAACGTCG CCGTCAAGAA TGTGATGGAT TTCTGCGTCG CGGGCCTCGG CTTCTGGCTT
GTCGGCTTTG GTCTCATGTT CGGCTTCAGC ATTGGCGGCT TTTTCGGCAG CACGAATTTC
GCCTTCAACG GCCCGAGCGC CGGCGCCTCG CCCGAGCTTG CCTGGGTCAT GGTCTTCTTC
TTCTTCCAGC TCGCCTTCTG CTCGACCTCG ACGACCATCG TCGCGGGCGC GGTGGCGGAG
CGGATGAATT TCCACGGCTA TCTCATCACC GCTGCCGTAC TCAGCATGCT GATCTATCCG
GTATTCGGCC ATTGGGCCTG GGGCGGCGTC CTTTCCGGCG AGGCGGCGGG CTGGCTGGAG
CTCAAGGGTT TCATCGATTT CGCGGGCTCC ACCGTTGTCC ACAGTATCGG CGGCTGGATC
GCGCTTGCGG CCATTCTCGT CATCGGTCCG CGCATCGGCC GCTTCGGTCC GGGCGGGCGG
CGCATCGAGC CGCATGACAT GCCGATGGCC ACGCTCGGCA TGTTCCTCTT GTGGATCGGC
TGGTTCGGCT TCAATGGCGG CTCCACGCTG GCGCTCAACA CCTCCGTTCC CTATATCCTC
GTCCACACCA TGCTGGCGGC CGCTGCCGGC GGCGTCGCGG TCATGGGCCT GAGCTGGGCG
CGCTCCGGCC TCCCCGATGT GCAGCACACG CTGAACGGCA TTCTCGCAGG CCTCGTCGCC
ATCACCGCCA ATTGCCATAT CGTCGACATG AACACCGCAG TTCTCATCGG TATCGGCGGC
GGCATCGTCT GCTTCCTCGC GAGCGAGCTT CTGGAGCGGC TTCATATCGA CGATGCGGTC
GATGCCGTGC CGGTGCATCT CGCCGCCGGC ATCTGGGGCA CGCTCGCCGT CGCGCTTTTC
GGCGATGTCT CCCTGTTCCC GAACGGCCAT TCCCGTTTCG ACCAGTTCCT GGTACAGGCG
CAAGGCGTTC TCGCGGCCGG CGTTTTCGCC TTCGGCGTCG CCTTCGTTGT CCTCACCATC
GTCAACCGTT TCCTGTCGCT GCGCGTCTCG GCGGATGCGG AGCGTATCGG CCTCAATGTC
GTGGAGCATG GCGCCTCGTC CGCCCTGCTC GATGTGCTGG GCGCCATGGA GGCGCAGGCC
TCGCGCGGCG ATTTCTCGAA GCCCGTCCAT GTCGAGCCCT TCACCGAAGC CGGCGAAATG
GCGACACGCT ACAATCTGGT GCTCGACAAA TTCAACAGCG AGGTGCGAAA GCGCGAGCAG
ACGGCGAACG ATCTGCGCGA CGCGCGCGAC GTGGCGGAGC TTGCCAACGC CTCCAAGTCG
CAATTCCTCG CCAATATGAG CCACGAGCTC CGCACGCCGC TCAACGCCAT TATCGGCTTC
TCCGAAGTGA TGAATGGCGA GTTGTTCGGG CCGATAGAGA ATGAACGCTA CAAGGATTAT
GTCGGCGACA TCCACAAATC GTCGAGCCAT CTCCTCAGTC TCATCAACGA CATTCTCGAC
CTCTCCAAGA TCGAGGCCGA CCGCTACGAG CTTTACGAGG AAGAACTCGA TGTGATGGAC
GTCGTTGCGA GCTGCGAGCG GATGATGCGC CACCGCGCCG ACGAGGCGGG CGTCGCGCTC
AAGGTCACGG TCGAGGATGA ATTGCCGCTT CTCATGGCCG ACAAGCGCGC GCTCAGGCAG
ATCGTGCTCA ATCTCGTTTC CAATGCCGTG AAATTCACCC CGAAGGGCGG GCTCATCCAG
CTCGGCGCCT TCATGGAGCC GGACGGCCGC ATGGCCTTCC GCGTCGCCGA TACCGGCGTC
GGCATGAGCA AGAAGGATAT TCCGATCGCG CTCGAGCCCT TCCGCCAGAT CGGCAAGGAC
AGCAATGTCT ATTCGACCGA AGGCACCGGC CTCGGCCTGC CGCTGACGCG GGCGCTGGCG
CGGCTCCATG GCGCTTCGCT CGTCATCGAG TCCGAGCCCG GCGAAGGCAC GACCATCACC
ATCCGCATGC CTTATTCCCG CGTGTTGCAG ACCGCCGTCC GCCGGATCGC GTGA
|
|---|
| Protein sequence | MGSAAQSIDT IWVLICTILV ILMQAGFTCL ESGLVRAKNS INVAVKNVMD FCVAGLGFWL
VGFGLMFGFS IGGFFGSTNF AFNGPSAGAS PELAWVMVFF FFQLAFCSTS TTIVAGAVAE
RMNFHGYLIT AAVLSMLIYP VFGHWAWGGV LSGEAAGWLE LKGFIDFAGS TVVHSIGGWI
ALAAILVIGP RIGRFGPGGR RIEPHDMPMA TLGMFLLWIG WFGFNGGSTL ALNTSVPYIL
VHTMLAAAAG GVAVMGLSWA RSGLPDVQHT LNGILAGLVA ITANCHIVDM NTAVLIGIGG
GIVCFLASEL LERLHIDDAV DAVPVHLAAG IWGTLAVALF GDVSLFPNGH SRFDQFLVQA
QGVLAAGVFA FGVAFVVLTI VNRFLSLRVS ADAERIGLNV VEHGASSALL DVLGAMEAQA
SRGDFSKPVH VEPFTEAGEM ATRYNLVLDK FNSEVRKREQ TANDLRDARD VAELANASKS
QFLANMSHEL RTPLNAIIGF SEVMNGELFG PIENERYKDY VGDIHKSSSH LLSLINDILD
LSKIEADRYE LYEEELDVMD VVASCERMMR HRADEAGVAL KVTVEDELPL LMADKRALRQ
IVLNLVSNAV KFTPKGGLIQ LGAFMEPDGR MAFRVADTGV GMSKKDIPIA LEPFRQIGKD
SNVYSTEGTG LGLPLTRALA RLHGASLVIE SEPGEGTTIT IRMPYSRVLQ TAVRRIA
|
|---|
| |