Gene Plav_1317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1317 
Symbol 
ID5455997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1452503 
End bp1453927 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content62% 
IMG OID640876888 
Productmajor facilitator transporter 
Protein accessionYP_001412594 
Protein GI154251770 
COG category[R] General function prediction only 
COG ID[COG2270] Permeases of the major facilitator superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.8065 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00000263926 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAGCCCCA TCGTCGAAGG CATTGTGCCC GGACTTCAGG CGCCGCACGA CACGCAGGAC 
GGGGAGCCGG CGTCGAACTG GGCTCAAGGT GCGTGGGTGC TCTACGAATG GGCGAACCAG
ACCTATTTCT CGCTCATCAC CATCTTTCTG TTTCCGCCTT TCTTCACGCA GGTGCTGGCG
GAGAACCCCA TTCAGGGCCA GGCCTATTGG GGCTATGTGC AGGCGGCGGC CGGCATTTCC
ATCGCGCTGA TGAGCCCGCT TCTCGGCGCC ATGGCGGATG CGGCGGGACC GCGCAAACCG
TGGATCGTCT TCTCCACGCT CTTCTGCGCC GCCGGCTGTT TCGGTCTCTG GTTCGCGGTG
CCGGGCCAGC CGCTGCTTCC CGTTGCCATC GCGCTCGTCG TCGCGGCGAT CGGCATGGAG
CTCACCATCA TCTTCGCGAA TGCCATGCTG CCGACCATCG CCTCCGACCG GCGCATCGGT
CTGCTCTCCG GCATCGGCAT CGGCGTCGGC CAGCTCGCGG CCATCGTCGC GCTCGTTCTC
GTGCTGCTCT TCCTGCAATT GCCGGGCGAG GTCAGCGCGC CATTCATTCC GGACGAGCCG
CTTTTCGGCC TCTCGAAGGA AGCGCATGAG ACGGACCGTA TCGTCGGGCC GATCTCCGGC
CTCTGGTTCC TCATCTTCAT GCTGCCGTTG CTCTTTCTCG TGCCGGACCA GAAGACGCGC
GGCCTCAGCC GCCGTCAGGC CGCGAAGGAA GGTCTCTTCC GTCTCTGGCA GACGCTGAAA
TCCGTAAAGC ATTTCCGCAA TGTCGGCATC TATCTCGCTG CCCGCATGCT CTTTTATGAC
GGCATGACGG CGATCTTCGT CTTTGGCGGC ATTCTCGCGG CGTCGCTTTT TGGCTGGGGC
GCGATGGAGA TGGCGGTCTA CGGCATCTGG GTCACGCTCT TCGCGGCCTT CGGCGCTTTC
GTGGGCGGAT GGGTCGATCT CAAGATCGGC TCGAAGAAGA CGCTGATCCG CGCCCTTGTC
GGTGTCATCG TCACCTTCCT CATCCTTCTT TCCTTCGACA GGGACCGGAT TTTCTATGTG
ATCGAAATCC CGGTCGCCGC CGATGCAGGC ACCTTCACCA CGCTGCCGCA GCAGCTTTTC
CTGCTCACCG TCGGCCTTTT CGGCATGATG GTCGGCCCGG TCATCGCTTC GAGCCGCACC
ATGATGGCGC GCATCGCGCC GAGGGAAATG ATGACGGAGT TCTTCGGCCT CTTCGCACTG
GTCGGAAAGG CGACGGCCTG GATCGCGCCG CTTCTCATCG GCATCGTTAC CGAGGCGACA
CAGAACCAGC GTTATGGATT GATGGTCGTG GTGCCGCTGA TATTGATAGG CCTTGCCGGT
CTTTTCATGG TGAAGGAAGA ACGTTCGGCC GCCGTGGTTC ACTGA
 
Protein sequence
MSPIVEGIVP GLQAPHDTQD GEPASNWAQG AWVLYEWANQ TYFSLITIFL FPPFFTQVLA 
ENPIQGQAYW GYVQAAAGIS IALMSPLLGA MADAAGPRKP WIVFSTLFCA AGCFGLWFAV
PGQPLLPVAI ALVVAAIGME LTIIFANAML PTIASDRRIG LLSGIGIGVG QLAAIVALVL
VLLFLQLPGE VSAPFIPDEP LFGLSKEAHE TDRIVGPISG LWFLIFMLPL LFLVPDQKTR
GLSRRQAAKE GLFRLWQTLK SVKHFRNVGI YLAARMLFYD GMTAIFVFGG ILAASLFGWG
AMEMAVYGIW VTLFAAFGAF VGGWVDLKIG SKKTLIRALV GVIVTFLILL SFDRDRIFYV
IEIPVAADAG TFTTLPQQLF LLTVGLFGMM VGPVIASSRT MMARIAPREM MTEFFGLFAL
VGKATAWIAP LLIGIVTEAT QNQRYGLMVV VPLILIGLAG LFMVKEERSA AVVH