Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1317 |
Symbol | |
ID | 5455997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1452503 |
End bp | 1453927 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640876888 |
Product | major facilitator transporter |
Protein accession | YP_001412594 |
Protein GI | 154251770 |
COG category | [R] General function prediction only |
COG ID | [COG2270] Permeases of the major facilitator superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.8065 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00000263926 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAGCCCCA TCGTCGAAGG CATTGTGCCC GGACTTCAGG CGCCGCACGA CACGCAGGAC GGGGAGCCGG CGTCGAACTG GGCTCAAGGT GCGTGGGTGC TCTACGAATG GGCGAACCAG ACCTATTTCT CGCTCATCAC CATCTTTCTG TTTCCGCCTT TCTTCACGCA GGTGCTGGCG GAGAACCCCA TTCAGGGCCA GGCCTATTGG GGCTATGTGC AGGCGGCGGC CGGCATTTCC ATCGCGCTGA TGAGCCCGCT TCTCGGCGCC ATGGCGGATG CGGCGGGACC GCGCAAACCG TGGATCGTCT TCTCCACGCT CTTCTGCGCC GCCGGCTGTT TCGGTCTCTG GTTCGCGGTG CCGGGCCAGC CGCTGCTTCC CGTTGCCATC GCGCTCGTCG TCGCGGCGAT CGGCATGGAG CTCACCATCA TCTTCGCGAA TGCCATGCTG CCGACCATCG CCTCCGACCG GCGCATCGGT CTGCTCTCCG GCATCGGCAT CGGCGTCGGC CAGCTCGCGG CCATCGTCGC GCTCGTTCTC GTGCTGCTCT TCCTGCAATT GCCGGGCGAG GTCAGCGCGC CATTCATTCC GGACGAGCCG CTTTTCGGCC TCTCGAAGGA AGCGCATGAG ACGGACCGTA TCGTCGGGCC GATCTCCGGC CTCTGGTTCC TCATCTTCAT GCTGCCGTTG CTCTTTCTCG TGCCGGACCA GAAGACGCGC GGCCTCAGCC GCCGTCAGGC CGCGAAGGAA GGTCTCTTCC GTCTCTGGCA GACGCTGAAA TCCGTAAAGC ATTTCCGCAA TGTCGGCATC TATCTCGCTG CCCGCATGCT CTTTTATGAC GGCATGACGG CGATCTTCGT CTTTGGCGGC ATTCTCGCGG CGTCGCTTTT TGGCTGGGGC GCGATGGAGA TGGCGGTCTA CGGCATCTGG GTCACGCTCT TCGCGGCCTT CGGCGCTTTC GTGGGCGGAT GGGTCGATCT CAAGATCGGC TCGAAGAAGA CGCTGATCCG CGCCCTTGTC GGTGTCATCG TCACCTTCCT CATCCTTCTT TCCTTCGACA GGGACCGGAT TTTCTATGTG ATCGAAATCC CGGTCGCCGC CGATGCAGGC ACCTTCACCA CGCTGCCGCA GCAGCTTTTC CTGCTCACCG TCGGCCTTTT CGGCATGATG GTCGGCCCGG TCATCGCTTC GAGCCGCACC ATGATGGCGC GCATCGCGCC GAGGGAAATG ATGACGGAGT TCTTCGGCCT CTTCGCACTG GTCGGAAAGG CGACGGCCTG GATCGCGCCG CTTCTCATCG GCATCGTTAC CGAGGCGACA CAGAACCAGC GTTATGGATT GATGGTCGTG GTGCCGCTGA TATTGATAGG CCTTGCCGGT CTTTTCATGG TGAAGGAAGA ACGTTCGGCC GCCGTGGTTC ACTGA
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Protein sequence | MSPIVEGIVP GLQAPHDTQD GEPASNWAQG AWVLYEWANQ TYFSLITIFL FPPFFTQVLA ENPIQGQAYW GYVQAAAGIS IALMSPLLGA MADAAGPRKP WIVFSTLFCA AGCFGLWFAV PGQPLLPVAI ALVVAAIGME LTIIFANAML PTIASDRRIG LLSGIGIGVG QLAAIVALVL VLLFLQLPGE VSAPFIPDEP LFGLSKEAHE TDRIVGPISG LWFLIFMLPL LFLVPDQKTR GLSRRQAAKE GLFRLWQTLK SVKHFRNVGI YLAARMLFYD GMTAIFVFGG ILAASLFGWG AMEMAVYGIW VTLFAAFGAF VGGWVDLKIG SKKTLIRALV GVIVTFLILL SFDRDRIFYV IEIPVAADAG TFTTLPQQLF LLTVGLFGMM VGPVIASSRT MMARIAPREM MTEFFGLFAL VGKATAWIAP LLIGIVTEAT QNQRYGLMVV VPLILIGLAG LFMVKEERSA AVVH
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