| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1272 |
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| Symbol | trmE |
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| ID | 5454475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1402213 |
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| End bp | 1403529 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640876842 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001412549 |
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| Protein GI | 154251725 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.803467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAAACGA TTTACGCCCT GTCGACGGCA GCGGGGCGCG CCGGCATTGC CGTGCTGCGC
CTGTCGGGGC CGCATGCGCG TGCGGCATTG CGCGCGCTGA CGGGGAGGAA AGCGGGCGCG
CCGCGCGAGG CCATGCTTTG CCGCTTCCGC GATCCCGAAA CGCATGCCGC GCTCGATCGC
GGCCTCGCGA TTTTCTTCCC CGCGCCTGCC AGCTTCACCG GCGAGGATGT GGTCGAGCTT
CACATTCATG GCGGCCGCGC CGTTATCGCC GCGATGCTCC GCGCGCTCGG TCAGCTCCCC
GGTCTCCGCG CCGCCCAACC CGGCGAGTTC ACACGCCGTG CCTTCGAGAA CGGCAAGCTC
GATCTCACCG AGGTCGAGGG TCTCGCCGAT CTCATCGACG CCGAGACGGA AGCACAGCGC
GCCCAGGCAC TCCGCCAGAT GGAAGGGGCG CTCGGCCAGC TTTACGAAGC CTGGCGCGCG
CGGCTCATGC GGGCGCTGGC TTACGCCGAA GCGGAAATCG ACTTTCCCGA CGAGGAAGTG
CCGGGCGATC TGATTGCAAA GCTCGGCCCC GACATTGAGG CGCTCGAAAC CGAAATAGCC
GCCCATCTCG ACGACGGCCG CCGCGGCGAG CAGTTGCGCG ACGGTGTCGA GGTGGCGATC
GTCGGACCGC CCAATGCGGG CAAGTCGAGC CTCCTCAACC GGCTTGCGGG CCGCGAGGCC
GCCATCGTCT CGGACGAGGC GGGCACGACG CGCGACGTGC TCGAAGTCCG GCTCGATATC
GGCGGCGTGC CGGTAACGCT GGCCGACACG GCGGGGCTGC GCGAGGCGGC GGGCGCCATC
GAGCAGGAAG GCGTGCGCCG CGCGCTGGCC CGGGCCGAGG CGGCGGATCT GCGCATCGTC
ATGGTCGCGC CCGGCGTCAG CGGCATCGGC AATGGCTTTG CGCTCGCCCG GCCGGATGAT
CTCCGCGTCC TCAACAAGGT CGATCTCGGC GCCGAGGTGC CCGATGGCGT CATCGGTATT
TCGGCGCTGA CGGGGCAGGG GATCGACGCG CTGGAAGCAG CCTTGGCGGC GCGTGTCGGC
TCGGCCTATG AGGCCCGCGA ACATCCCGTC ATCACGCGGG CCCGCCACCG CGAGGGCCTT
GCCGATTGCG CCGCTTCGCT TGCCCGCGCC GAGGCCGCGC TCAAGGCGGG GCGCGACGCC
GAGCTCGTCG CCGAAGACCT CCGCCTCGCC GCCCGCGCCC TTGGCCGCAT CACCGGCCGC
GTCGATGTCG AGGACCTGCT CGACGTCATC TTCCGCGACT TCTGCATCGG GAAATAG
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| Protein sequence | METIYALSTA AGRAGIAVLR LSGPHARAAL RALTGRKAGA PREAMLCRFR DPETHAALDR
GLAIFFPAPA SFTGEDVVEL HIHGGRAVIA AMLRALGQLP GLRAAQPGEF TRRAFENGKL
DLTEVEGLAD LIDAETEAQR AQALRQMEGA LGQLYEAWRA RLMRALAYAE AEIDFPDEEV
PGDLIAKLGP DIEALETEIA AHLDDGRRGE QLRDGVEVAI VGPPNAGKSS LLNRLAGREA
AIVSDEAGTT RDVLEVRLDI GGVPVTLADT AGLREAAGAI EQEGVRRALA RAEAADLRIV
MVAPGVSGIG NGFALARPDD LRVLNKVDLG AEVPDGVIGI SALTGQGIDA LEAALAARVG
SAYEAREHPV ITRARHREGL ADCAASLARA EAALKAGRDA ELVAEDLRLA ARALGRITGR
VDVEDLLDVI FRDFCIGK
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