| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1099 |
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| Symbol | |
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| ID | 5454216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1205334 |
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| End bp | 1206716 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640876669 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001412377 |
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| Protein GI | 154251553 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAATC AACTCAGCGC CCCCGCCCGG AAAAATTCAG GGAGAATAGT GCCTGTTGCG
CTGGCGCTGA TGCTGGGGGC TTGTTCGATG GTGCCGGATT ATGCGCGGCC GGAGACGGGG
ACGCCGGATG CGTGGAGCGG ACCGCGCGTG GCGGGAATGG ATGTGGCCGC CGATACGCAA
TGGTGGAATT CGTTCGGCGA CCCGGAGCTG ACGCTGCTGA TGCAGGTGGC GCTGGCGAAC
AATCTCGACA TCGAACAGGC GCTGGCCCGC GTGGAGCAGG CGCGCGGCGC GGCACGCGCG
GCGGGCTCTT CGCTGCTGCC GCAGGTTTCC GGCAGCGGCA GCGCCTCGTC GCGCTCCGTC
GATGGCGGCT CGATGAGCGA CAGTTCGCAG ATCGGGCTTT CGGCGAGCTA TGCGCTCGAC
ATATGGGGCC GCTACAGGGC GCAGGCGCAG TCGGCGGATC TTTCGCTGGT GGCGAGCGAG
TTCGACGGAT ATTCGGCGGC GCTGATCGTT CAAAGCCAGG TGGCGACGAC CTATTTCACG
ATACTGGCGC TGAAGGACCG GATTGCGATT GCCGAGGAAT CGCTGGCGGC GGCGCGGGAT
ACGCTGCGGA TCGTCGAGGC GCGCTACAAT GCGGGTAGCA TTTCGGGGCT CGACCTGGCG
CAGCAACGGA ACGCCGTGGC GACGATCGAG GCAAGCCTGC CCTCGCTTCG CGCGCAGGAA
GCGGCCAACG AGAATGCGCT CGCAATCCTG CTTGCGCGCG TGCCCGGGCG CTTCGCGGTG
GAGGGGGAGA CGCTCGACAA GATCGCCCTG CCCGCCATTG CCGCGGGCCA GCCATCGGAA
CTTCTGGAGC GGCGGCCGGA CATTCGCAGC GCGGAGGCGA GGCTGCTGGC GGCGAATGCG
AATATCGGCG CGGCACGGGC GGCCTTCTTT CCAAGCCTCG ATCTTTCGGC ATCCGTGACG
CGGAGCTTTG CCGGCGGCGT GGCTGAAACG GCGAGCGCAC TCGGCGCATC GCTTCTGGCG
CCGATCTTTT CCGGCGGATC GCTGGAGGGC AACCTGCAAT CGGCCGAAGG GCGGCAGGTG
GAACTGGCGG CAAACTACAA GCAGACCGTT CTCACCTCCT TTGCGGAAGT GGAGAATGCA
CTGGTCAATG CCGATGCCAA TGCGCTGCGG GAAGCCTCTC TTGCCGTGGC GGCCGACGAG
GCGCGCCGGG CCTATGATCT GGCGCAGGCG CGCTATCGCT CCGGCGCGAG CGACCTGCTC
TCCGTGCTCG ATGCGCAGCG AAGCTGGCTA TCGGCGCGGG ACAGCGCGGC GCAAGCGCGG
CTCAACCGCT ACAGCTCGGC GGTGGACCTT TTCGTGGCGC TGGGCGGCGG CTGGCGGAGC
TGA
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| Protein sequence | MPNQLSAPAR KNSGRIVPVA LALMLGACSM VPDYARPETG TPDAWSGPRV AGMDVAADTQ
WWNSFGDPEL TLLMQVALAN NLDIEQALAR VEQARGAARA AGSSLLPQVS GSGSASSRSV
DGGSMSDSSQ IGLSASYALD IWGRYRAQAQ SADLSLVASE FDGYSAALIV QSQVATTYFT
ILALKDRIAI AEESLAAARD TLRIVEARYN AGSISGLDLA QQRNAVATIE ASLPSLRAQE
AANENALAIL LARVPGRFAV EGETLDKIAL PAIAAGQPSE LLERRPDIRS AEARLLAANA
NIGAARAAFF PSLDLSASVT RSFAGGVAET ASALGASLLA PIFSGGSLEG NLQSAEGRQV
ELAANYKQTV LTSFAEVENA LVNADANALR EASLAVAADE ARRAYDLAQA RYRSGASDLL
SVLDAQRSWL SARDSAAQAR LNRYSSAVDL FVALGGGWRS
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