| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1017 |
|---|
| Symbol | |
|---|
| ID | 5456816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1112433 |
|---|
| End bp | 1113122 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640876587 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001412296 |
|---|
| Protein GI | 154251472 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.957911 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.735899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG CCTCCCATCG CGTACTCGTC ATCGACGACG AACCGCCGAT CCGCAAACTG
TTGCGCATGG GCCTGAGTGC GCATGGCTAT GAAATTCAGG AGGCGCCGAA CGGCAGGACG
GCTCTGGACA TGCTTGCGCA GAATCCGGAT TTGATCATCC TCGATCTCGG GCTGCCGGAC
ATTCAGGGGC TTGACCTGCT GCGGACGATC CGAAGCCGCA ACGAGAGCGT TCCGATTGTC
GTCCTGTCCA GCCGTGGCGA CGAGACCGGC AAAGTCGAGG CACTCGACCT CGGCGCCGAC
GACTATGTGA CGAAGCCTTT CGGCATGGAT GAATTGCTTG CACGAATGAG GGCGGCGCTT
CGCCACCGGC TTCAGATGCA GGGCGAGCGA CCGGTCTTTC ATGTCGACGC GCTTGCCGTC
GACCTCGTGC GACGCATCGT CAAAGTGAAC GATAACGAGG TGAAGCTGTC TCCCAAGGAA
TACGACCTGC TACGCGTTCT CGTTCAGCAC GCGGGCAAGG TGTTGACGCA CAGATTTTTG
CTCGGCGAGT TGTGGGACGA ACTGACTGAC GCCCAATATC TGAGGGTCTA TGTCCGCCAA
CTCAGACAAA AGATCGAACC CGATCCCGAA CGGCCGGAAT ATATCCTGAC CGAAACCGGG
ATTGGCTACA GGCTGCGCGC ACCGGATTGA
|
|---|
| Protein sequence | MSPASHRVLV IDDEPPIRKL LRMGLSAHGY EIQEAPNGRT ALDMLAQNPD LIILDLGLPD
IQGLDLLRTI RSRNESVPIV VLSSRGDETG KVEALDLGAD DYVTKPFGMD ELLARMRAAL
RHRLQMQGER PVFHVDALAV DLVRRIVKVN DNEVKLSPKE YDLLRVLVQH AGKVLTHRFL
LGELWDELTD AQYLRVYVRQ LRQKIEPDPE RPEYILTETG IGYRLRAPD
|
|---|
| |