| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0988 |
|---|
| Symbol | |
|---|
| ID | 5454566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1068640 |
|---|
| End bp | 1069494 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640876559 |
|---|
| Product | taurine catabolism dioxygenase TauD/TfdA |
|---|
| Protein accession | YP_001412268 |
|---|
| Protein GI | 154251444 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.534798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCG ATTTTGAATT GCGCACCCGG CCGCTGATGC CGGGCTTCGG CGTCGAAATC
TTCGACGTTG ACTTGAAGAC CGCCGGCAGC GATGCGCGCC AGAAAGTCGT CGATCTGTTT
CATGCGAACG GTGCGATCCT TCTGCGTAGA CAGGACATGG ATCCCGACGA CCTCATGTCT
TTCATCGGCC TGTTCGGCGA GGCGGAAGAT CACACCCAGA CGCAGTTTAC CCTGCCCGGC
TACAGCAAAA TCTTTCTGCT CTCGAACAAG ATCGTCGACG GCAAGCCTAT CGGTGCGCAT
AACGACGGCG TCGGATGGCA TACCGACTAT TCCTACAAGG AAGAGCCGGT CATGTGCACG
ATGCTCTATG CCGTCGAGGT GCCGGATGAA GGCAGCGACA CGCTCCTCGC CGACCTTTGC
GCCGCTTACG ATTCACTCCC GCGAGAGCGG CAGGCGCAAC TCGATGGGCT CGTGCTTCAT
CACAGCTATC AGCACCTGAT GTCAACGCGG CAGTTCGGGC GCATGGAGCT CAGCGAAGAG
ATGAAGGCGG CCAATCCGGA CGTGTTTCAC CCGCTTGTCC GCACGCATCC GGCGGACGGC
CGCAAGGCAT TGTGGGTCAG CACCGGAACG GTGAAAGGTA TCGTCGGCAT GCCGGACGAT
GAGGCCCAGG CGCTCATCGA CGAGCTCGTC GAGTTCGTCA CCAGCGAGCC CTTCGTTCAT
CGGCACAAAT GGCATGTCGG CGACATACTG ATGTGGGACA ATCGTTGCAC GCTGCACACC
GGTACCGTGT TCGACGACAC GAAATACATT CGGTTGATGC ATCGCCTTTG GGTCAAGGGC
GACAAGCCTT TCTGA
|
|---|
| Protein sequence | MTTDFELRTR PLMPGFGVEI FDVDLKTAGS DARQKVVDLF HANGAILLRR QDMDPDDLMS
FIGLFGEAED HTQTQFTLPG YSKIFLLSNK IVDGKPIGAH NDGVGWHTDY SYKEEPVMCT
MLYAVEVPDE GSDTLLADLC AAYDSLPRER QAQLDGLVLH HSYQHLMSTR QFGRMELSEE
MKAANPDVFH PLVRTHPADG RKALWVSTGT VKGIVGMPDD EAQALIDELV EFVTSEPFVH
RHKWHVGDIL MWDNRCTLHT GTVFDDTKYI RLMHRLWVKG DKPF
|
|---|
| |