| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0980 |
|---|
| Symbol | |
|---|
| ID | 5456422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1059130 |
|---|
| End bp | 1060032 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640876551 |
|---|
| Product | ribokinase-like domain-containing protein |
|---|
| Protein accession | YP_001412260 |
|---|
| Protein GI | 154251436 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.167032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGCA GGGTTCTGTG CGTCGGGCGC AACAGCCTCG ATCTCGTCTT CAATGTCGAG
CTCGCGCGCC TGCGGCCGGA CAGCAAGCAG CGCACAAGCG ATCCTGCTGT GCTTGTCGGG
GGCCAATGCG TGAACGCGGC GGTGACGCTG GCAGGGCTCG GCTGTGCGGT TTCCTATGCG
GGTGTCGTCG GGGGCGATGC AGGAGCGGAG CGGGTTCTTG CTTTTCTGCA GGAGCGCGGC
ATCGATTGCG CCGCCGTCGA AACCGCCGCC GGCATGGCGA ACCCCTGCGC CTACATCATG
GTGGACGCAA AGACAGGCGA GCGAAGCATC GTCGAGACCG CCCCGGACAG CTTTCCCCGC
TTCACGGGGC GCATCGCGGA GAAGCTCTGG GCCGTGACGT CGAGCGTCTA TTTCGACGGG
CACGAGGAAG ATGCCTCGAT TGCGATTGCC GCCGAGGCAG CGCGGCGCGG CGTGCCGACG
CTGACCGATG CCGAAACATT GACGGAGGGC ACGCGGGAAC TGCTGTCGCT GGCCGATACG
GCCATCGTGC CCGGAGCGGT GGCGATGGAG CTGGCGGGGT CCGACAGACC CGACGACATG
CTCCGGGCGC TTGCAGCTCT CGGCGGCACG GCGCATGTCG TTACCCTCGG CGAGGAAGGG
GCATTCGGCG CGGTGGCGGG CGGGACGACG CACCGGGTTC CCGCGTTTCC CTGCAACGCC
ATAGATACGA CCGGCGCGGG CGATGCGTTT CACGCGGGCT TCCTCTTCGC GAAGATGGCC
GGAGCGGCCT TCCCGGATGC CATGACCTTC GCCGCGCGCG TCGCGGCGAA GGCTTGCGAG
GTGAGGGGAG CCAATCTGGA TGCTCGGACG CTCGCACTGC TTGGCGCGGA CTTCAGTCGA
TGA
|
|---|
| Protein sequence | MKGRVLCVGR NSLDLVFNVE LARLRPDSKQ RTSDPAVLVG GQCVNAAVTL AGLGCAVSYA
GVVGGDAGAE RVLAFLQERG IDCAAVETAA GMANPCAYIM VDAKTGERSI VETAPDSFPR
FTGRIAEKLW AVTSSVYFDG HEEDASIAIA AEAARRGVPT LTDAETLTEG TRELLSLADT
AIVPGAVAME LAGSDRPDDM LRALAALGGT AHVVTLGEEG AFGAVAGGTT HRVPAFPCNA
IDTTGAGDAF HAGFLFAKMA GAAFPDAMTF AARVAAKACE VRGANLDART LALLGADFSR
|
|---|
| |