Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0790 |
Symbol | |
ID | 5453421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 855332 |
End bp | 855958 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640876359 |
Product | pyridoxamine 5'-phosphate oxidase |
Protein accession | YP_001412070 |
Protein GI | 154251246 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.150003 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATG TCACCACGGC CACCGACGAG AGCGGTATTT TCACCTCGGA GGACCCGATT GCGCTCTTCC ATGAATGGAT GGAGCTTGCC CGCGCGAAGG AACCGGAAGA CGCGAATGCC ATGGCGCTGG CGACGGCGGA TGCTTCCGGT TTTCCCGATG TGCGGATGGT GCTGCTGAAG GAGGCGGATG CGCGCGGCTT CGTTTTCTAC ACCAATCTCG AAAGCGCCAA GGGACTGGAA TTAAAGGAGA ATTCCCGCGC CGCCCTGTGC TTCCACTGGA AGAGCCTGCG CCGCCAGGTG CGCGTCAGAG GCGACGTTAT CCCGGTGAGC AAAGAGGAGG CGGATGCCTA TTTTGCCACG CGCGCGAGGG ACAGCCAGAT CGGTGCATGG GCATCGAAGC AATCGCGGCC GCTTGCGGGT CGTTTTGAGC TCGAGAAGCA AGTCGCTGTT TTTGCTGCGA AATTCGGCGT GAGCAGGGTG CCGCGGCCGG ATCACTGGTC CGGTTTCCGC GTTGTACCGC GCCATATCGA ATTTTGGCGC GACAGGCCCT TCCGGCTCCA TGATCGCCTT GTTTTTGAAC GGGAAAAGCC CGCCGAGGCC TGGCGGACGA AGAAGCTTTT CCCCTGA
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Protein sequence | MNDVTTATDE SGIFTSEDPI ALFHEWMELA RAKEPEDANA MALATADASG FPDVRMVLLK EADARGFVFY TNLESAKGLE LKENSRAALC FHWKSLRRQV RVRGDVIPVS KEEADAYFAT RARDSQIGAW ASKQSRPLAG RFELEKQVAV FAAKFGVSRV PRPDHWSGFR VVPRHIEFWR DRPFRLHDRL VFEREKPAEA WRTKKLFP
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