Gene Plav_0651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0651 
Symbol 
ID5456530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp715173 
End bp715829 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content63% 
IMG OID640876220 
ProductTetR family transcriptional regulator 
Protein accessionYP_001411931 
Protein GI154251107 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0025795 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value0.249536 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCCTACA GGCAGACTGA CAAGGTGGCG GCACGGCTGG CGGACACCCG GCGCAGCATC 
CTCGATGCAG CGCGGATGCT TGTGGCCGAT GGCGGCTTTG CGGCCGTTCA GATGACCGAG
ATTGCAAAAA GAGCCGGCGT CGCAACAGGC ACGCTTTACC GCTATTTCTC CTCCAAGGAA
GAACTTTGCC GACAGGTATT TCGCGAAGTG TCCGCGCGGG AGATGGACAT GCTCGCGACA
ATCGCTTCGG GGAACGAACC TGCGCGCGAG AGGCTGGCCG AGGTGCTGCG CACATTCGCC
AGCCGCGCCG TTCGGGGCCG GCGCCTGGCC TATGTCCTGC TCGCCGAGCC TGTGGATGTG
AACCTTGCCG AGGAGCGCGC CTTCTTCCGT CGCACCCATG CCGAGATCTT CGCCGGCATT
CTCGAGGACG GCATTGAGAC CGGCGAATTT CCAAAGACCA ATGCGCGGAT TGCGGCCGCC
TGCATCGCAG GCGCCATACC CACGGCGTTG ATCGGTCCCC TCGCACCGGA ATCGCACGAG
CTCGACAGCG CGCCCGAGCG CGTGGTGGAA GAGATCGTCA GTTTCTGCAT GGCAGGTGCC
GGCGTGACGG CGCCACGAAA ATCGAACCAG ACGAAAGAAC GGAGAGCATC GCTATGA
 
Protein sequence
MAYRQTDKVA ARLADTRRSI LDAARMLVAD GGFAAVQMTE IAKRAGVATG TLYRYFSSKE 
ELCRQVFREV SAREMDMLAT IASGNEPARE RLAEVLRTFA SRAVRGRRLA YVLLAEPVDV
NLAEERAFFR RTHAEIFAGI LEDGIETGEF PKTNARIAAA CIAGAIPTAL IGPLAPESHE
LDSAPERVVE EIVSFCMAGA GVTAPRKSNQ TKERRASL