| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0648 |
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| Symbol | |
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| ID | 5456720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 710860 |
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| End bp | 712845 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640876217 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001411928 |
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| Protein GI | 154251104 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.173169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCGTC CCGCAGACAA GGGACAAGCG GCGAAGCAGT CCGAGACCAG TGCGGGAGAA
TTCCGCGCGG CATCGGGCGA TTTCTATCGC GCCCTCGTCG AAAATGTCGG CGACATCCTC
ACCATTCTCG ATTGCGACGG CGTCATCACC TATCAGAGCC CGGCTGTGCG CAAGGCGATG
GGCACGTCGG AAGATCTTCT CGTCGGGCGC CGGATCGCGG ATCTCGTTCA TCCCGACGAC
CGTGAGCGCA TCGAGCGGCG TATTGCGGAA TGTGCGCGCG TCCCCGGCTC GGAAGTCCTG
GAACTCGTGC GCCTGCCGCA TCTCAACGGA ACGTGGCGCC GCCTGGAAAC GCGCGGATGC
AATCTGATCG GCGACCCCGA TGTGGCCGGT ATCCTGTGCG TCTCTCGCGA CGTAACCGAA
ACCCATATGC TGGAAAGCAA GCTGCGCGAA GCCGAGCAGC TGGCGCGCTT CGGCCATTGG
CGCTGGGTGA AGGGCGAGCC GGCGCCGCAA TGGTCGCGCG GCGTGGCCAG GATCCTCGGC
CTTGAAGAGG GTCAGCTTCC CGCCGCCGGC GACTGGTACG AACATCTCGT TCACCCGGAA
GACCGCGACG AGCTTCTTTC ACAATTCATC GACGCCTTCG AGACGCACGA GCCCGTAAAT
TCCATTACCC GCTTTCGTGC CGGAGACGGG AACTACCGCT ACATCAAGAC CTATGCCTAT
GCCGAGGCTG ATGCCTATAG CGAGATCGGC GCGCTTGTCG GCCTCGCAGA AGATGTGCAT
GAGGAGGTCG AGGCCGAACT CGCGCTCAAG GCGAGCGAAG CGAAATACCG GCTGATGACG
GAGCAGGCCT CCGACGTCGT GGCGCATTAC GACGCGGAAT CGAAAGTCAT CTTCATCTCA
CCTGCCGTCG AGCCGATCCT CGGCCGGAAG GCCGAGGAAT TCATCGGCAA TCCGATTTCG
GAAGAGATGA TCCACCGGGA AGATTTTCCG CGCGCGCGGG ATGCCTTCAT CCAGTGCATT
ACCAGCGGCG AGTCGGTCCA TTTCGACTAC CGGTTCCTTC ACAAGGACGG ACACTATGTC
TGGCTTGAGT CGACGATGCG CCGGGCGTGC GACACGGATG GCAGGCAGAC GGCGGAAGTG
ATCGGTATCA CGCGCGACAT CAGCGAGCGC AAGCGGCACG AGATGGAGCT TCTCGATGCG
CGTGAGCGCG CAGAAACCGC GAGCCGTACG AAGTCCCGCT TCCTCGCCAA TATGAGCCAC
GAGCTCCGGA CACCGCTCAA CGCGATCATC GGATTCTCGG AAATTCTGCG TATGCAGATG
TTCGGCGCGC TCGGGCATCC GCGATATACC GAATATGCGC AGCTCATCAA CGAAAGCGGC
GCGCTTCTCC TCGATCTCAT AAGCGACATT CTCGACATGT CGAAGATCGA GGCGGGAAAA
TACGAACTGC ATCCCGAAAC GGTGGACGCT GCCGCTCTCA TCGAATCCTG CGTGCGCCTC
GTCCGCGGCC GGGCCGAGGA GAACGGCATT CACCTCGTCA AGAAAATCCA ATGCGCGGAG
CTTGGCGGCA CCCTTGTCGC GGATGAGCGC GCCCTCAAGC AGATCATGCT GAACCTTCTG
TCCAACTCGG CGAAATTCAC GCCGGCGGGC GGGCGCATTT CGGTTGCGCT TACGGAGACG
GAAGAAACGA TCTGTTTCGC CGTCGCCGAT ACGGGGCGCG GCATCCCGGC CGATCAGATC
GCGCGGCTCG GCCAACCCTT TGAACAGATC GCGACAGATG CGGCGCTCAG CAAGGAGGGT
ACAGGCCTCG GCCTTGCCCT GGTGCGCTCT CTTGCCGAGT TGCATGGCGG CAGCATGGCG
ATCGACAGCG AACTCGGCGT CGGCACAACG GTCACTGTAA CGCTTCCGAA GATCCCCTAT
TGCGCGCTGC CCTCGTCCGC ACCGGCCGCG GAGCCGGAGC CCGGTCCCAT CGCGGCGACA
ATCTAG
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| Protein sequence | MGRPADKGQA AKQSETSAGE FRAASGDFYR ALVENVGDIL TILDCDGVIT YQSPAVRKAM
GTSEDLLVGR RIADLVHPDD RERIERRIAE CARVPGSEVL ELVRLPHLNG TWRRLETRGC
NLIGDPDVAG ILCVSRDVTE THMLESKLRE AEQLARFGHW RWVKGEPAPQ WSRGVARILG
LEEGQLPAAG DWYEHLVHPE DRDELLSQFI DAFETHEPVN SITRFRAGDG NYRYIKTYAY
AEADAYSEIG ALVGLAEDVH EEVEAELALK ASEAKYRLMT EQASDVVAHY DAESKVIFIS
PAVEPILGRK AEEFIGNPIS EEMIHREDFP RARDAFIQCI TSGESVHFDY RFLHKDGHYV
WLESTMRRAC DTDGRQTAEV IGITRDISER KRHEMELLDA RERAETASRT KSRFLANMSH
ELRTPLNAII GFSEILRMQM FGALGHPRYT EYAQLINESG ALLLDLISDI LDMSKIEAGK
YELHPETVDA AALIESCVRL VRGRAEENGI HLVKKIQCAE LGGTLVADER ALKQIMLNLL
SNSAKFTPAG GRISVALTET EETICFAVAD TGRGIPADQI ARLGQPFEQI ATDAALSKEG
TGLGLALVRS LAELHGGSMA IDSELGVGTT VTVTLPKIPY CALPSSAPAA EPEPGPIAAT
I
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