Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0644 |
Symbol | |
ID | 5456906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 707179 |
End bp | 708162 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640876213 |
Product | RNA-binding S4 domain-containing protein |
Protein accession | YP_001411924 |
Protein GI | 154251100 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGA GCCCCCAATC CTCACCAGAC ACCCCCGCAG GCGACCGCAT CGCGAAAGTG ATTGCGCGCG CCGGCATTTG CTCGCGCCGC GAGGCCGAGA AGCTTATCGA GGAAGGCCGC GTCACGGTGG ATGGCAAGGT GCTGAAAAGC CCCGCCCTCA ACGTCACAGG CCGCGAGACC ATCATCGTCG ACGGCAAGGC CTTGCCCGCG CAGGAGCCGA CAAAGCTCTG GCGCTACCAC AAGCCGGCCG GCCTCGTCAC CACGGCGAAG GACCCGGAAG GCCGGACCAC CGTATTCGAG AAGCTGCCGG ACGATATTCC GCGCGTCGTC TCGGTGGGCC GGCTCGACAT CAATACCGAG GGTCTGCTGC TTCTCACCAA TGACGGCGAG CTGGCGCGGC TGCTCGAACT GCCCGCCACG GGCTGGACGC GGCGCTACCG GGTGCGCGCC TGGGGCCGCA TCACCCAGGC CGATCTCGAC AAGCTCAAAA ACGGCATCAC TGTCGAAGGC GTGCGCTACG GCCCGATCGA GGCGACGATC GACAAGGTGC AGGGATCGAA TGTCTGGCTC ACGCTCGGCC TGAAGGAAGG CAAGAACCGC GAGGTGAAGC GCGTCCTCGC CGAACTCGGC TTGAGCGTCA ACCGCCTCAT CCGCCTTTCC TTCGGTCCGT TCCAGATCGG CGATCTCGAA CCGGGCGACA TCAAGCAGGT GCCGAACCGG GTGCTGATGG ATCAGCTTGG CGCCCATGCC GAACAATTCG CGCCGGCCGA AGTGCGGCCG TCGAAAGGCG CGGCGACCGG CAGCACCGGA AAATGGACTG GCGGTAAACC TGTCGGCAGG AAAGCAGGCG ACAAACCGCC TGCAAAGCCG GAGCGGACAA AGCCGGGTGG CACGAAGCCG AAACTGAAAA CCTTCCGTGA GAAAAAGGCC GATACGGCCG GCAAGAGAAA GGCTCCGAAT GCGGATCGTC GGCGGCGTCC ATAG
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Protein sequence | MKPSPQSSPD TPAGDRIAKV IARAGICSRR EAEKLIEEGR VTVDGKVLKS PALNVTGRET IIVDGKALPA QEPTKLWRYH KPAGLVTTAK DPEGRTTVFE KLPDDIPRVV SVGRLDINTE GLLLLTNDGE LARLLELPAT GWTRRYRVRA WGRITQADLD KLKNGITVEG VRYGPIEATI DKVQGSNVWL TLGLKEGKNR EVKRVLAELG LSVNRLIRLS FGPFQIGDLE PGDIKQVPNR VLMDQLGAHA EQFAPAEVRP SKGAATGSTG KWTGGKPVGR KAGDKPPAKP ERTKPGGTKP KLKTFREKKA DTAGKRKAPN ADRRRRP
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