Gene Plav_0637 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0637 
Symbol 
ID5453984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp700512 
End bp702038 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content64% 
IMG OID640876206 
ProductUbiD family decarboxylase 
Protein accessionYP_001411917 
Protein GI154251093 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 
TIGRFAM ID[TIGR00148] UbiD family decarboxylases 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTACG CCTCCCTCCG CGAATTCCTT TCAATGCTCG ATGCCAGCGG CGACCTCGCG 
CGGGTGAAGG AACCTGTTTC GACCGTTCTG GAGATGACCG AGATCCAGAC CCGCCTGCTG
GCCGAGCAGG GGCCGGCGGT CCTTTTCGAG CAGGCGCAGA TGGCCGATGG CCGCCCCTCG
CCCATGCCGG TACTGGTGAA CCTGTTCGGC ACCGTGGAGC GGGTGGCGCG CGGCGTCACC
ATGGGCGGCA TCGAGCGCCG CCATGCGAAG GATCTCCGCG AGGTCGGCGA GGCTCTTGCC
TTCCTCCGCC AGCCGGAGCC GCCGGGAGGC TTTCGTGAGG CCATATCCAT GCTGCCGCTG
CTCCGCACGG TCATGGCGAT GAAGCCGAAG ACGGTCTCTT CCGCGCCCTG CCAGGAGGTC
GTGCTGAAGG GCAGCGACAT CAACCTCAAC GATCTGCCGA TCCAGACCTG CTGGCCGGGC
GAGCCCGCAC CACTCATCAC CTGGCCGCTC GTCGTGACCA AAGGGCCGAA GGGCACGAAG
GAAGACGATT TCAACCTCGG CATCTACCGG ATGCAGGTGC TCGGCCCGAA CAAGACGATC
ATGCGCTGGC TGGCGCATCG CGGCGGCGCG CAGCATCACG CGCGCTGGAA GAAGGAAAAG
CGTGAGCCGC TTCCGGCCGC CTGCGTCATC GGTGCCGATC CCGGCACCAT CCTCGCCGCT
GTCACGCCCG TTCCCGACAC GCTGTCGGAA TACCAGTTCG CGGGCCTCCT GCGGGGGCAA
AAGGTCGAGC TCGTCGATTG CAAGACAGTG CCGCTGAAGG TGCCGGCCGA GGCCGAAATC
GTCATCGAGG GCCATGTCTC GCTCGACGAT TACGAAGACG AAGGCCCTTA CGGCGACCAC
ACCGGCTATT ACAATTCGGT AGAGAAATTC CCCACCTTCA CCGTCTCCGC GATCACTATG
CGGAAGGACC CGATCTATCT CTCGACCTTC ACCGGCCGCC CGCCGGACGA GCCTTCCGTG
CTCGGCGAGG CACTGAACGA GGTCTTCATT CCACTGTTGC AGCAGCAGTT CCCGGAGATA
ACGGATTTCT GGCTGCCGCC CGAAGGCTGC TCCTACCGCA TCGCCGTCAT TTCGATGAAG
AAGGCCTATC CCGGTCACGC CAAGCGCGTG ATGATGGGCG CATGGTCCTA TCTGCGTCAG
TTCATGTATA CGAAATGGAT CATCGTGGTG GATGACGACA TCAACGCGCG CGACTGGAAG
GACGTCATGT GGGCGATCAG CACACGGATG GACCCGGTGC GCGACGTGAC ACTGGTCGAG
CACACGCCGA TCGACTATCT CGACTTCGCC TCGCCCGAAA GCGGCCTCGG CGGCAAGATC
GGCCTCGACG CGACGAACAA ATGGCCGCCC GAAACAAAGC GTGAATGGGG CCGCCAGATC
CGCATGGACC AGGACGTCAT CGACACGGTA ACGAACAAAT GGTCGAAGCT CGGCCTGCCG
GGCACGGGCA AGCCGATCTG GAAGTGA
 
Protein sequence
MSYASLREFL SMLDASGDLA RVKEPVSTVL EMTEIQTRLL AEQGPAVLFE QAQMADGRPS 
PMPVLVNLFG TVERVARGVT MGGIERRHAK DLREVGEALA FLRQPEPPGG FREAISMLPL
LRTVMAMKPK TVSSAPCQEV VLKGSDINLN DLPIQTCWPG EPAPLITWPL VVTKGPKGTK
EDDFNLGIYR MQVLGPNKTI MRWLAHRGGA QHHARWKKEK REPLPAACVI GADPGTILAA
VTPVPDTLSE YQFAGLLRGQ KVELVDCKTV PLKVPAEAEI VIEGHVSLDD YEDEGPYGDH
TGYYNSVEKF PTFTVSAITM RKDPIYLSTF TGRPPDEPSV LGEALNEVFI PLLQQQFPEI
TDFWLPPEGC SYRIAVISMK KAYPGHAKRV MMGAWSYLRQ FMYTKWIIVV DDDINARDWK
DVMWAISTRM DPVRDVTLVE HTPIDYLDFA SPESGLGGKI GLDATNKWPP ETKREWGRQI
RMDQDVIDTV TNKWSKLGLP GTGKPIWK