Gene Plav_0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0612 
Symbol 
ID5455301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand- 
Start bp678028 
End bp678636 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content66% 
IMG OID640876181 
ProductTetR family transcriptional regulator 
Protein accessionYP_001411892 
Protein GI154251068 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.136679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.487596 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGGAC AGAGCGGCGC CGCGCAGAAG ACGGCAGGAT TGGCGGACAA GCGGGAGGTG 
ATCATCTCCT CCGCGCTCGA TCTGTTCCGT CACTATGGTT ACCGCCGCAC TTCGATGGAA 
GACATCGCGC GCGCCGCCGC CGTCGCCAAG GGCACGCTTT ACCTCTACTT CAAAAGCAAG 
GACGAACTCT TCGAAGCGAT CTGCCGGACG CTGGCCGAAC AGGTCGCGGA AGGCGTCACG 
GCGGCGGAAG CGCTCGACCT GCCGCTCGAG CGGAAGCTTG CCGCGCTGAT GGAGGCGAAG 
CTCGGTTTCG TCTATCGCTG GATTCTTTCG AGCCCGCATG CGGCGGAGCT CGTCGACAGC 
GGCAGCCGCC TGAAGGAAAA TGTTTTCGGC GACGTTCACG TTCAGTTCCA GAACGCCGTC 
CTCCAGCTTG TCCGCGAAGG CACCCAGCGC GGCGAGCTCG ATCCCAAGGC CAGCGGCCTC 
ACCCAGGAAG CCGCCGCCGA AACCCTCATC GCCGCCGCCT GCGGCGCCGA AAAGGCACCG 
GACGAGGAAA CCTTCCGCCG CCAGCTCGCC GCCATCATCA AGCTGACCCT GCGCGGCCTG 
CGCGCCTGA
 
Protein sequence
MSGQSGAAQK TAGLADKREV IISSALDLFR HYGYRRTSME DIARAAAVAK GTLYLYFKSK 
DELFEAICRT LAEQVAEGVT AAEALDLPLE RKLAALMEAK LGFVYRWILS SPHAAELVDS 
GSRLKENVFG DVHVQFQNAV LQLVREGTQR GELDPKASGL TQEAAAETLI AAACGAEKAP 
DEETFRRQLA AIIKLTLRGL RA