| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0548 |
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| Symbol | |
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| ID | 5455908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 598728 |
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| End bp | 599513 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876116 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001411828 |
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| Protein GI | 154251004 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAGAC TATCGGGAAA GCGCGCAATC GTTACGGGCG CTGGCAGCGG CATAGGCCGG
GCCAGCGCCC GTTTATTTGC GCATGAGGGC GCTCAGGTCG TCGCCGTCGA CCGCGCGGAA
GATGCCGTGG ACGAGACCGC CGCCCTGATC CGCAAGGAAG GCGGCACGGT TTCGTCCGTC
GCCGCCGATG TCAGCGACGA AACCGCCGTC AAAGCCTTTG TTGAACATTG CATAGCCGAA
TATGGCGGCC TCGACGTCCT CTATGCCAAT GCCGGCATCA GCGGCGGCCT CGTTCCGCTG
CAGGAACAGA CTGTCGGCTA CTGGCAAGAG ATACTGGCGA TCAACCTGAT CGGCCCGTTC
CTCGCGATCA AATATGCCAG TCCCCACATG ATCCGCCAGG GCCACGGCTC GATCATCTGC
ACGGCATCTG TTGCCGGCCT GCGCGCCAAT GCGGGCGGCA CGCCTTACAG CGCCAGCAAA
GCCGGTGTCG TGAGCCTCGT CCAAACCACC GCCAACGAGT TTTACGGCAC CGGCGTTCGC
GTGAATGCCA TCTGTCCGGG GCTCATCGAA ACAGGCATGA CGAAACCCAT ATTCGACGGC
GCGAGAGCAA GAGGCTCGGA AGACAGGATT GGCCAGTTGA ACCCGCTGAA GCGATATGGC
CTGCCGCCGG AAATCGCGCA AGCTGCCCTC TTCCTTGCCA GCGACGATGC CTCCTATGTC
AACGGTCAGG CGATTGCCGT CGATGGCGGC CTTTCCAGCA CGCATCCCTT CGCCGGCCGG
CGCTGA
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| Protein sequence | MGRLSGKRAI VTGAGSGIGR ASARLFAHEG AQVVAVDRAE DAVDETAALI RKEGGTVSSV
AADVSDETAV KAFVEHCIAE YGGLDVLYAN AGISGGLVPL QEQTVGYWQE ILAINLIGPF
LAIKYASPHM IRQGHGSIIC TASVAGLRAN AGGTPYSASK AGVVSLVQTT ANEFYGTGVR
VNAICPGLIE TGMTKPIFDG ARARGSEDRI GQLNPLKRYG LPPEIAQAAL FLASDDASYV
NGQAIAVDGG LSSTHPFAGR R
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