| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0452 |
|---|
| Symbol | |
|---|
| ID | 5456204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 485705 |
|---|
| End bp | 486556 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640876018 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001411732 |
|---|
| Protein GI | 154250908 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00426986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGATC AATTGCCGCC TGAAGTTCGC GAACAGCTCG ATGTGTTGCT GCCGCTTGTC
ATGGAGCGGG GGCTGGGGCT GCTGTCGGCA ATCCTTATTC TCATTCTCGG GCTCTGGTTT
GCCGGGAAGC TGCGGCTCTG GACCATGCGC GCCTTTGCGC GGATGCCGCA GATGGACGAG
ATGCTGCAGA ATTTCTTCGG CACCATCGTC TGGTATCTCG CGATCATCTT CACCGTGCTG
GCGGTGCTGG CGAAATTCGG CGTGCAGACG GCGAGCCTTA TCGCCGTGCT CGGCGCGGCG
GGCCTTGCCG TCGGCCTGGC GCTGCAGGGG ACGCTGGCGA ATGTGGCAGC GGGCGTGATG
CTGCTCATCA TCCGGCCTTT TCGCGCCGGG CATTATGTGG AAGTCGGCGG GATCGCGGGC
ACGGTGAAAT CGCTGTCGCT TTTCACGACG GAGCTTTCGA CGCCGGACAA TGTGCAGATC
ATCGTGCCGA ACAGCGACAT CTGGGGGCAG GCGATCAAGA ACTATACCTA TCACCCGACG
CGGCGGCTGG ACGTGACGTT CGGCATTTCA TACGGCGACA ATATCGGCAA GGCGATGGGC
ATCATCAGGG CGGAGATCGA GGCAGATGCA CGCTGCCTCG CCGAGCCGGA GCCTTTTACG
GGCGTGCTCA ATCTCGGCGA AAGCTCCGTC GACATCGTGA TGCGCGTGTG GGTCGCGAAC
AGCGAATACT GGAACGTGCG CTTCGACCTT ATGCAGAAGA TCAAGGAACG CTTCGACGCG
GAGGGCATCA CCATCCCCTT CCCCGCGCGG ACGGTCTACA CTGTCAATCC CGCCAAGGAA
GCGGCGGAAT AA
|
|---|
| Protein sequence | MLDQLPPEVR EQLDVLLPLV MERGLGLLSA ILILILGLWF AGKLRLWTMR AFARMPQMDE
MLQNFFGTIV WYLAIIFTVL AVLAKFGVQT ASLIAVLGAA GLAVGLALQG TLANVAAGVM
LLIIRPFRAG HYVEVGGIAG TVKSLSLFTT ELSTPDNVQI IVPNSDIWGQ AIKNYTYHPT
RRLDVTFGIS YGDNIGKAMG IIRAEIEADA RCLAEPEPFT GVLNLGESSV DIVMRVWVAN
SEYWNVRFDL MQKIKERFDA EGITIPFPAR TVYTVNPAKE AAE
|
|---|
| |