Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0439 |
Symbol | |
ID | 5457040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 474386 |
End bp | 475702 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640876005 |
Product | MATE efflux family protein |
Protein accession | YP_001411719 |
Protein GI | 154250895 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGAGG CGGCGGCGCG GGTGAACCAT CGCAAGGTTC TTGCCATCGC CATTCCCATC GTCATTTCCA ACATCTCGAC GCCGCTGCTC GGCATTGCCG ATACGGCGGT GATGGGGCGG ATGGGCGATC CGAAATATAT CGGCGCGGTG GCCATCGGCG CGCTCATCTT CACCATGGTC TACTGGACCT TCGGCTTTCT GCGCATGGGG ACGACGGGGC TTACCGCGCA GGCGCTGGGC GCGATGGATG GCGAGGAAAT CCGCGCTTCG CTCGGGCGGG CGCTGCTGAT TGCCGGGGCG GTGGGCGCGG CGCTGATCCT CATGCAATGG CCGATAGGCT TTGCCGCTTT CGCACTGCTC GACGGCAGAG AGGAAGTGGA GAGCCTCGCG CGCGTCTATT TCGACATCCG CATATGGAGC GCGCCTTTTG CGCTGGCGAA TTATGCGCTG GTCGGATGGT TCATCGGGCT CGGGCGCGCG AATATCGCGC TGGCGCTGCA GGTGTTCCTC AACCTCGTCA ACATCTTCTT CAACATCGCG CTGGCGCTGG GGCTCGGCTG GGGCGTGGCG GGGATTGCGG CGGGAACGCT GATCGCGGAA GTGGCGGCGG CGCTTGCCGG GCTTGCGGTG GCGGCGCGGC ATTTGCGGTT CTATCCGGGG CAATGGACGC GGGCGCGGCT CCTCGATGCG GCGCGGCTGG CGCGGACGGT CGCGGTCAAT CGCGACATCA TGATCCGCAC CATCGTGCTG ATGTTTTCCT TCGCGTGGTT CACGGCGAAG AGCGCCGAGG CGGGCGCGGT GACGCTGGCC GCCAATTCGA TCCTGCTGCA ATTCGTGACG GTGAGCGCCT TCTTTCTCGA CGGTTTCGCG CTGGCCGCCG AGGCGCTGGT GGGCAAGGCT TTCGGCGCGC GCAGCCGCGA GGATTTCGAT CTTTCGGCGC GGCTTTCGAC CGCCTGGGCG GCGGGGATCG CGTGTACATT GTCGCTCGGG ATTTTCGCGT CTGGCGGTTT CGTCATCGAC TTCCTCACCA TCGATGAGGA AGTGCGCGCG GCGGCGCGGG TCTATCTCTT CTGGGCGGCG CTGCTGCCGG TGCTGTCGGT CTGGTGCTAC CAGCTCGACG GGATATTCAT CGGCGCGACA CGCGGGACCG AGATGCGGAA CGCGGCGCTG GCATCGAGCG CGCTGTTCCT GACGCTCTGG TGGCTGCTGC TGCCTTACGG CAATCACGGG CTGTGGGCGG CGCTTGCGGG CTTCAACCTG ATGCGGGCGG CGTCGCTCGG ATTTTACTAT CCGCGACTGA GGCGGGCGCT GGCGTGA
|
Protein sequence | MSEAAARVNH RKVLAIAIPI VISNISTPLL GIADTAVMGR MGDPKYIGAV AIGALIFTMV YWTFGFLRMG TTGLTAQALG AMDGEEIRAS LGRALLIAGA VGAALILMQW PIGFAAFALL DGREEVESLA RVYFDIRIWS APFALANYAL VGWFIGLGRA NIALALQVFL NLVNIFFNIA LALGLGWGVA GIAAGTLIAE VAAALAGLAV AARHLRFYPG QWTRARLLDA ARLARTVAVN RDIMIRTIVL MFSFAWFTAK SAEAGAVTLA ANSILLQFVT VSAFFLDGFA LAAEALVGKA FGARSREDFD LSARLSTAWA AGIACTLSLG IFASGGFVID FLTIDEEVRA AARVYLFWAA LLPVLSVWCY QLDGIFIGAT RGTEMRNAAL ASSALFLTLW WLLLPYGNHG LWAALAGFNL MRAASLGFYY PRLRRALA
|
| |