| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0386 |
|---|
| Symbol | |
|---|
| ID | 5453978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 417292 |
|---|
| End bp | 418560 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640875951 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001411666 |
|---|
| Protein GI | 154250842 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2856] Predicted Zn peptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.375659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCG GTATGATTCT CAACGAACGC GAACTTAAAG AAGCGCGCGC AAAAATTTCC
GCCCTTAATG AGGCGTTGTC CTCGGAGCGG GCTTTGGAGC CTATGGTTGC AGGGCTTCCA
CCTGAAGTTG TGCTTCAGGT GACGCACGCC CTAAAGGCTG AGCGCAAAGA ACTAACATCC
TCCGTAGAAG CTTATGAGCA AGCTAAGGAC GACGGAAATT ATAAGAACAT GCGCCAAAAG
GCCGGTGGTG ATCCCGGCCT GGCCTTAATT GTTGCGCGAA TTGCTAGAGG GCTAACTCAG
CGTGATTTGG CGTGGAGGCT TGGCCTTAAA GAACAGCAAG TACAACGGTA TGAAGCTGAT
CGGTACAGTA CTATTAGCTT GAAGAATTAC ACCAAGATTG CCCTTCTGCT TGGTGTCCAG
TTGCGCGCCG ACATTCAGGA ATTTGGCGGT CTCGACCAAG TGATAGAGAA TGTTTCAAAA
CAAAGTATAC GGAAGATTCT TAGTCACGGG CGCCAACACG GATGGTTTTC TGAGGAAAAT
GACGAACAGG AACTTCGTAA GCTAATCGCG GAGAACCGCA TTGATTTTGG CAGCCCGTCC
TTGTTGCGCA CAGGGTTAAA CGTCAAAGAC TACAGCGAAG ATATTTTGCT TCATGCTTGG
CGTGCGCGGG TCTCGAATAG GGCGCAGGAA ATAATTGATG CGAGTCGTCC AGAGTTTGAG
CCGTTAGAGC TGACTTGGCT CTCCGATTTG GTGAAGCTAA GTGTTCATGA AGCGGGGCCA
CTAGAAGCGC AGAACATGCT CTTGCAGCAT GGAATAATTC TGGTGGTCGA ACCGCAGATT
CCCGGCCTTG CAATTGATGG AGCCGCTTTT TTGCAAGGAG ATGTTCCGGT CATCGGGATG
ACCATCCGAA AAGACTCCAT TGACAATTTT TGGTTCACGC TTCTGCACGA GCTGGCACAT
GTGCTTCTCC ATTATCGAAT GGGGTTGGCG GTTGGATTTT TCGATCAAAT AGAAGCGGAA
TCAGTGGATG CTATGGAGGC AGAGGCTGAT GCATTCGCGT CAAGCATCTT GATACCGGAC
GAACTATGGC GTCGATCATC GGCAAGAATA GCTCAGTCAC CTACAGTGAT TGAGAAATTT
GCAGCTGAAC TTGGGATACA CGCTTCAATA GTGTTTGGCA GAATTAGAAA AGAAAGAAAC
GACTACTCAA TTTTTTCACA GAAAATTGGG GGAAAAAAAG TGCGTACTCT GTTCGTGTCT
TCAACGTAA
|
|---|
| Protein sequence | MAIGMILNER ELKEARAKIS ALNEALSSER ALEPMVAGLP PEVVLQVTHA LKAERKELTS
SVEAYEQAKD DGNYKNMRQK AGGDPGLALI VARIARGLTQ RDLAWRLGLK EQQVQRYEAD
RYSTISLKNY TKIALLLGVQ LRADIQEFGG LDQVIENVSK QSIRKILSHG RQHGWFSEEN
DEQELRKLIA ENRIDFGSPS LLRTGLNVKD YSEDILLHAW RARVSNRAQE IIDASRPEFE
PLELTWLSDL VKLSVHEAGP LEAQNMLLQH GIILVVEPQI PGLAIDGAAF LQGDVPVIGM
TIRKDSIDNF WFTLLHELAH VLLHYRMGLA VGFFDQIEAE SVDAMEAEAD AFASSILIPD
ELWRRSSARI AQSPTVIEKF AAELGIHASI VFGRIRKERN DYSIFSQKIG GKKVRTLFVS
ST
|
|---|
| |