Gene Plav_0357 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0357 
Symbol 
ID5453656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp380705 
End bp381874 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content56% 
IMG OID640875922 
Productintegrase family protein 
Protein accessionYP_001411637 
Protein GI154250813 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTCA CCGACATTTC GCTGAAGACT TTGCAGCCTC CTGTCAAGGG GCAAGTGACG 
TATGCCGACG ACACCTTGCC CGGCTTCGGT GTGCGGGTAT CGCAGGGCGG CGTCAAATCG
TTCGTTGTCG TTCACGGACG CAATCGCAAG CGGACGACGA TCGGCCGTTA CCCTACGATC
AGTCTCCAAG ATGCGAGGAA GGCAGCAAAA CAGATACTTG CCGAACGCAC GCTCGGCAAA
CATGAGGCTC CGCCGATTGA TTTTGAAGCC GGCCTCAAGC TGTTCCTCGC GGCACATTTC
CCTGAGAACT ATCCAAAGCC GCGAACGCGG GCCGAAACCA AACGCCAGCT CGAAAAGCAC
TTTCTTCCAT CTCTTCGTCA CGAGAAGCTG GAGCATATTC AGGCGCGGGA AATTTCCCGG
ATCATCGACA AGATGCACAA AACTCCTGGT GAGGCCCGTC ATGCGTTTGC TGTGATCCGA
CTGTTCTTCA ACTGGGCATT CCGGCGAGGC TATGTTGATC GCAGCCCGTG CGAACGACTT
CAGGCGCCAA AACAATCGCT GCCACGAGAC CGCGTCCTTA CCCAAGACGA AATCAGGACC
GTTCTCGGTC ACGCCAGGGA AAGGGATACG ACATTCAACA GTATCGTTCA GCTGCTTCTG
CTGACCGGAC AGCGCAGGGG CGAGATCGCA TCACTTCAGG CGGACTGGAT CGACTTTGAC
AGCCGAACGA TCACTCTGCC CGCCACGGTT ACCAAGAACA AGCGTCAACA TGCTTTTCCA
TTCGGTGAGA TGGCGGAAGT AATTCTGAAG CGTGCATTAT TGCAAGCGCA GCAATCAAGA
GAAGAGCGCC GGGAATACGA GGACGCGGAC GAGAAGGCTC TCCTCCTCTT CCCTGCTCGC
GGAAAGCATA CGGCTTTCGA CGGATGGTCA AAGGGAAAGC CGAACTTCGA CAAGGGATGC
CCGATAGATC ACTGGACGCT ACACGATCTC AGGCGTACAT GCGCGACCAA TCTTGCCGCG
CTCGGCGTTC CCGTTCATGT AACCGAGAAG CTCCTGAATC ATATTTCGGG AACGACAAGC
GGGATCGTCG CGGTCTATCA ACGGCATGCT TATATGGACG AGATGCGCGA TGCCATAGAG
CGATGGGAAC TGCACTTGCG CTCGCAATAG
 
Protein sequence
MRLTDISLKT LQPPVKGQVT YADDTLPGFG VRVSQGGVKS FVVVHGRNRK RTTIGRYPTI 
SLQDARKAAK QILAERTLGK HEAPPIDFEA GLKLFLAAHF PENYPKPRTR AETKRQLEKH
FLPSLRHEKL EHIQAREISR IIDKMHKTPG EARHAFAVIR LFFNWAFRRG YVDRSPCERL
QAPKQSLPRD RVLTQDEIRT VLGHARERDT TFNSIVQLLL LTGQRRGEIA SLQADWIDFD
SRTITLPATV TKNKRQHAFP FGEMAEVILK RALLQAQQSR EERREYEDAD EKALLLFPAR
GKHTAFDGWS KGKPNFDKGC PIDHWTLHDL RRTCATNLAA LGVPVHVTEK LLNHISGTTS
GIVAVYQRHA YMDEMRDAIE RWELHLRSQ