| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0192 |
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| Symbol | |
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| ID | 5455025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 216945 |
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| End bp | 218492 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875753 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_001411472 |
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| Protein GI | 154250648 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTAG CACCGAGACT CGAGATGCGC CAGGGGCAGT CCCTGGTCAT GACGCCCCAG
CTGCAGCAGG CGATCAAGCT GCTGCAACTG TCCAATCTCG AACTTGCCGA CTATGTCGAA
CAGGAACTAG AGCGTAATCC GCTGCTCGAA GCGACGACCT CCGATCCTTC CGACCGGACG
GGCGAAGAAC GCGCCGCGCC TGAAACGGAT CGCGAAACCG TCACCACGTC CGAGACATCG
CTTTCGCTCA CCGATGACGG GCCGCTGCCT GGCCGCGACG GCGACATCGA CACCGATTAC
GACAATGTCT ATGCGGATGA ATCCCGCGCC GACATGCAGA ACGATGCAGC GGCGGCGGCC
GCCGACGCGC CGGGACCGAC GGGCTCCGAC TGGCAGAACA TGAAGGGCGG CGGCGGCAAT
ACCGGCGACG GCGATTACGA CTTCGCTGCC ACGCTGACGC GCGAGGCAAC GCTTGCCGAA
CATCTGACCG AACAGATGAA CACCGCGCTC AAGACCGCGG GCGACCGTCT CATCGGCGCC
TATCTCATCG ACCAGGTGAA CGAGACCGGC TACATGACCG CCGATCTCGC GGAGGTCGCC
GAACGTCTCG GAACCGATGT CGAGGATGTG GAGGCGGTGC TGCAGGTTCT GCAGACATTC
GAGCCGACCG GCATCTGCGC GCGCAACCTC AAGGAATGTC TCGCACTGCA GCTCGCGGAG
CGCAATCGCC TCGATCCGGC GATGCAGGCC TTTCTCGACA ATCTCGAACT CTTCGCGAAG
CGCGATTTCG ACACGCTGAT GAAGCTCACC GGCGCCGACC GCGAGGATAT CGCGAGCATG
GTGGAGGACA TCCGCACCTG CAATCCGAAG CCCGGCCTCG CCTTTGGCGG AGAGCCTGTC
GTGCCGGTGA TACCGGACGT CTTCGTGCGT TCGCGCGCCG ATGGAAGCTG GATGGTGGAA
GTCAATTCCG AGACGCTGCC GCGCGTGCTC GTGAACCAGC AATATTATTC GGAAGTGTCG
AAGCTTTCGG GCGATCCGAG CGCCAAGGCC TATCTCTCCG AGTGCCTCAA CAATGCGAAC
TGGCTGGTCA AAAGCCTCGA TCAGCGCGCG CGGACGATCC TCAAGGTCGC GTCCGAAATC
GTGCGCCAGC AGGATGCGTT CCTCGTTCAC GGCATTCAGC ATCTGAAGCC CTTGAACCTG
AAGACCATCG CCGAGGCGAT CTCGATGCAT GAATCGACGG TCTCCCGCGT CACCGCCAAT
AAATACATCG CGACGCCGCG CGGGATTTTC GAGATGAAGT ATTTCTTCAC CTCCTCCATC
GCCTCCTCAT CGGGCGGCGC GGCGCATTCG GCGGAAGCCG TGCGTCACCG GATCAAGGAA
CTGATCGATG TCGAGCGCCC GGATGCGGTG CTGTCGGACG ACAATCTCGT CGATATCCTG
AAGGGCCAGG GTGTCGATAT TGCGCGGCGC ACCGTCGCCA AGTATCGGGA AGCACTCAAC
ATTCCCTCTT CCGTGCAGCG CAGGCGCGAA AAAAAGGCCT ATGCGTGA
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| Protein sequence | MALAPRLEMR QGQSLVMTPQ LQQAIKLLQL SNLELADYVE QELERNPLLE ATTSDPSDRT
GEERAAPETD RETVTTSETS LSLTDDGPLP GRDGDIDTDY DNVYADESRA DMQNDAAAAA
ADAPGPTGSD WQNMKGGGGN TGDGDYDFAA TLTREATLAE HLTEQMNTAL KTAGDRLIGA
YLIDQVNETG YMTADLAEVA ERLGTDVEDV EAVLQVLQTF EPTGICARNL KECLALQLAE
RNRLDPAMQA FLDNLELFAK RDFDTLMKLT GADREDIASM VEDIRTCNPK PGLAFGGEPV
VPVIPDVFVR SRADGSWMVE VNSETLPRVL VNQQYYSEVS KLSGDPSAKA YLSECLNNAN
WLVKSLDQRA RTILKVASEI VRQQDAFLVH GIQHLKPLNL KTIAEAISMH ESTVSRVTAN
KYIATPRGIF EMKYFFTSSI ASSSGGAAHS AEAVRHRIKE LIDVERPDAV LSDDNLVDIL
KGQGVDIARR TVAKYREALN IPSSVQRRRE KKAYA
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