| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0185 |
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| Symbol | |
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| ID | 5455331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 211043 |
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| End bp | 213229 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875746 |
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| Product | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor |
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| Protein accession | YP_001411465 |
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| Protein GI | 154250641 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.0848528 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACGA TCAATACACG ACGACTCCCC CTTCTATCTC TCCTCTTCGC AACCACCTCC
CTCGCCGCGA TCTCCGTGGC GCAGGCTCAG GACACCACCG GCACAGACAC CGGGGAAGAC
GCGCCCAAGG CGACGCAGCT CGACGCCGTC ACCTCCACCG CGACGCGCAA TCCGACCGCG
ATCAACGATG TCGCAGGCAC CGTCTCCGTC ATCACGGCGG AAGAGCTTGA GCGCCGCAAC
GCGAATTCGA TGCAGGACAT CGTGCGCTAC GAGCCGGGCG TCTCGGTCAG CAATTCGCCG
ACCCGCGTCG GCGCCGGCAA CTTCACCATT CGCGGCATCG GCGGCAATCG CGTGCTGGTG
CTGGTCGATG GCTTCACTGC GCCCGATTAC ATCGACGCTT CCGCGGGCGG CCTCTATACG
CGCGACTTCT TCGATCTCGA CAGCATGAAG CGCGTCGAAA TCATTCGCGG CCCGGCCTCC
GCGCTTTACG GTTCCGATGG TCTCGGCGGC GTCGTCTCCT ATGTGACGAA AGACCCGTCC
GACTATCTCG ATATTTTCGA CAAGGATTGG TATGCGAGCC TCAAGAGCGG CTATGACAGC
TCCGATGAGA GCTTCACGGA ATCGGCAACC GGCGCCGTCC GCGCGGGCAA TGTCGAAATG
CTCGGCCTCT ATACGCGCCG CGACGGCCAC GAGGTCGAAC CGAACAGCAG CTATGTCGCC
AATCCGATCG ACTATGAGTC GAACTCGTTC CTCGCCAAGC TCGTCTTCAA CGGGCCGGAC
AGCAACAAGC TCACCTTCAC CGGCCAGCTC GACAACAAGC AGGCCGATAT CCGCCTCTTG
AGCGAAGAAA CCGGCACCGT CAATCGTTCC GAAGCGACCG ACGAGACCGA CCGCTACTTC
GTCAGCGCCG CCTACTCCCA CCGGATGCCG ACGCCGATCG CGGACCGCAT GGAACTCAAG
ATCGGCTACA CCAAGCTCGA CCGCGTCGAG CATACCGAAC AGCTCCGCAG CGGCAGCACG
GTTCTCCGCC TCTCCGATCT TCACTTCAAT CAGGAGATTC TCAGCGGCGA CTTCCAGTTC
GGCCTGACGC GCGAATGGGC GGGCTTCACG CATGATTTCA CCTATGGCGT GACCGCCGAC
TACACGGAAA CCTCGCGCCC CCGCTACCGG ACCGAGACCA ACCTCATCAC CAACACGACC
ACCAATGTCG TCGGCTTCGA GACATTCCCG AACAAGAACT TCCCGGATAC CGAGACGATC
AAGGCGGGCG TCTATGTGCA GGACGATATC GGCATCGGCC GGTTGAACAT CATTCCGGCG
CTCCGCTTCG ACTATTATTC GCTCGATACG AAGATCGACC GGATGTTCCT CAACTCGGCG
GGCACCAACG TGCCGGTCGA CATGACGGAG ACGGAAATCT CTCCGAAGCT CGGCCTGACA
TTCGCGCTTA CCGAGGAATA CAAGATCTTC GCGCAATACG CGCATGGCTT CCGCGCGCCG
CCCTATGACA GCGCAAACTA TGCCTGGCAG CACACGACCT TCGGTTATGA AATCATTCCG
AACCCGAACC TGAAGCCGGA AACGAGCGAC GGCTTCGAGG CGGGCCTGCG CGGCAAGTTC
CGCGACGGAT CGAGCTTCTC GGTCGCAGGC TTCTACAACA CCTATGAAGA CTTCATCGAC
CAGGTCCTCC TCGGCGTGGG CGGCGTGCCG CCGCTGATGC AGTTCCAGTA TCAGAACCTC
GCCGAAGTCA CGATCTACGG CGCCGAAGCC AAGGGCGAAT ACCGCTTCCT GCCGGAATGG
GCGCTTATCG GCAGCCTCGC CTATGCGCGC GGCGAGGACG ACCAGACCGG CGACCCGATC
GACTCGGTCG ACCCGCTCAA GGGCGTTCTC GGTCTCGCCT ATGAAGGCGA CAGCTGGGGC
TCGCAACTCG TCGCCACCCA TGCCTGGCGC GACACGCGCA ACGCAACGCC CGGCAATTTC
GAGGCGCCGT CCTACACGCT GGTCGACCTC ATGGCCTATT ACGACATGTC GGAACACCTG
ACCGTGAATG CCGGCATCTT CAACATCTTC GACGAGGAAT ATTACTTCGC CCAGGATGTC
GCCGGCCTTG CCTCCGGCAG CCCGCTCACC GGGCGCTATG CGCAGCCCGG CCGCAATTTC
GGCATCAACG CAACCGTTCG CTTCTGA
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| Protein sequence | MATINTRRLP LLSLLFATTS LAAISVAQAQ DTTGTDTGED APKATQLDAV TSTATRNPTA
INDVAGTVSV ITAEELERRN ANSMQDIVRY EPGVSVSNSP TRVGAGNFTI RGIGGNRVLV
LVDGFTAPDY IDASAGGLYT RDFFDLDSMK RVEIIRGPAS ALYGSDGLGG VVSYVTKDPS
DYLDIFDKDW YASLKSGYDS SDESFTESAT GAVRAGNVEM LGLYTRRDGH EVEPNSSYVA
NPIDYESNSF LAKLVFNGPD SNKLTFTGQL DNKQADIRLL SEETGTVNRS EATDETDRYF
VSAAYSHRMP TPIADRMELK IGYTKLDRVE HTEQLRSGST VLRLSDLHFN QEILSGDFQF
GLTREWAGFT HDFTYGVTAD YTETSRPRYR TETNLITNTT TNVVGFETFP NKNFPDTETI
KAGVYVQDDI GIGRLNIIPA LRFDYYSLDT KIDRMFLNSA GTNVPVDMTE TEISPKLGLT
FALTEEYKIF AQYAHGFRAP PYDSANYAWQ HTTFGYEIIP NPNLKPETSD GFEAGLRGKF
RDGSSFSVAG FYNTYEDFID QVLLGVGGVP PLMQFQYQNL AEVTIYGAEA KGEYRFLPEW
ALIGSLAYAR GEDDQTGDPI DSVDPLKGVL GLAYEGDSWG SQLVATHAWR DTRNATPGNF
EAPSYTLVDL MAYYDMSEHL TVNAGIFNIF DEEYYFAQDV AGLASGSPLT GRYAQPGRNF
GINATVRF
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