Gene Plav_0142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0142 
Symbol 
ID5455203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp158621 
End bp159460 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content60% 
IMG OID640875702 
Producttryptophan synthase, alpha subunit 
Protein accessionYP_001411422 
Protein GI154250598 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0159] Tryptophan synthase alpha chain 
TIGRFAM ID[TIGR00262] tryptophan synthase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGACAC GGCTCGAAAA ACGGTTCGCG CAATTGAAGG GCGAGGGCCG CGCAGCCTTC 
ATCGCCTTCA TCACAGCAGG TGATCCGGAC TTTGAAACCT CGCTCGGGAT TCTCAAGGGG
CTGCCGGCTG CGGGCGCTGA CGTGATCGAA CTGGGCATGC CCTTCACCGA TCCGATGGCG
GATGGCCCTG CCGTCCAGGC GTCCACTCAG CGCGCGCTTC GCGGCGGTGC GCGCATGACA
AAGACACTTG AACTCGTACA AAAATTCCGC GAGGAGAACA CGGAAACGCC GATCGTGCTG
ATGGGCTATT ACAATCCCAT CTATCACATG GGTGTCGAAA ACTTTCTTGC GAAGGCCATT
GATGCCGGAG TGGATGGCTT GATAGTCGTC GATCTTCCGC CGGAGGAAGA TGACGAGCTA
TGCGAACCTG CGTTGAAGGC AGGATTGAAT TTCATTCGTC TGGCGACACC TACAACCGAT
GACAAGAGAT TGCCCGCCGT TCTCGCCAAC ACATCGGGCT TTGTCTATTA CGTTTCGATC
AACGGCATTA CCGGGTCCGC AAGTCCACAG GCGCGGAACG TGGCGGAAGC CGTGGCGCGA
ATCAAACGGC ACACCTCTTT GCCGGTCGCG GTCGGCTTTG GCATTCGCAC TCCCGAGCAG
GCAGCGGAAA TAGCGCGTTC AGCCGACGGA GCGGTGGTTG GTTCAGCAAT CGTAGACGCC
ATCGCTCACG AACTCGACAG CAGCGGCAAG ATCAGGCCGG AGGCCGTCGA GCGAGTGCTC
GGTTTTGTCC GGTCGCTGGC AGACGGCGTT CACACCGCGC GTGCGGCTAC GGCAGAATAG
 
Protein sequence
MTTRLEKRFA QLKGEGRAAF IAFITAGDPD FETSLGILKG LPAAGADVIE LGMPFTDPMA 
DGPAVQASTQ RALRGGARMT KTLELVQKFR EENTETPIVL MGYYNPIYHM GVENFLAKAI
DAGVDGLIVV DLPPEEDDEL CEPALKAGLN FIRLATPTTD DKRLPAVLAN TSGFVYYVSI
NGITGSASPQ ARNVAEAVAR IKRHTSLPVA VGFGIRTPEQ AAEIARSADG AVVGSAIVDA
IAHELDSSGK IRPEAVERVL GFVRSLADGV HTARAATAE