Gene Plav_0130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0130 
Symbol 
ID5453531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp143180 
End bp143959 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content65% 
IMG OID640875690 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001411410 
Protein GI154250586 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0000437524 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTCG GATTGCAGGG ACGGAAGGCG ATTATCTGCG CTTCGTCGCG CGGGCTCGGC 
AAGGCCTGCG CCATGGCGCT GGCACGCGAG GGCGCCGATG TCGTCATCAA CGGGCGGAAC
GCGGAGGTGC TGGACCTTGC GGCGCATGAG ATTGCCGCCT CGGCCAAGGG ATCGGTGACG
CCGATTGCCG CCGACATCAA CACCGAGGAA GGCCGGGCGC GGCTCGTTGC CGCCTGCCCG
GAGGCCGACA TTCTCGTGAA CAATAATGAC GGGCCGCCGC CCGGCGCCTT TCAGCAATGG
GACGAGGCCC AATGGCAGGC GGCGCTCAAC GCGAACCTGC TCGCACCCGT CTTCATGATC
AAGGCGCTGA TCGAGGGCAT GAAGGAGCGG CGCTTCGGGC GGATCGTCAA CATCACTTCC
GCGATGGTGA AGGCGCCGCG CTCGGCCATG GGGCTTTCGA CGACGGCGCG CTCCGGCCTT
ACCGCGATTT CGAAGGCGCT TTCCGTCGAC GCCGCGCCCT TCAACGTGAC GATCAACAAC
ATGCTGCCCG AACGCTTCGA CACGGACCGG CAGCAGCAGA TGGCGAAGCT CGCCATGCAG
TTCAAGAAAA TCACCTATGA GGAAGCGCGC GCGGAAATCG CCCAGTCGAT TGCCGCCAAG
CGCATGGGAC AACCTTCCGA ATTCGGCGAT GCCTGCGCCT TTCTCTGCAG CGCCCAGGCG
GGCTTCATTT CCGGGCAGAA CCTGCAACTG GACGGGGGCT CCTACCCCGG CCTCATCTGA
 
Protein sequence
MDLGLQGRKA IICASSRGLG KACAMALARE GADVVINGRN AEVLDLAAHE IAASAKGSVT 
PIAADINTEE GRARLVAACP EADILVNNND GPPPGAFQQW DEAQWQAALN ANLLAPVFMI
KALIEGMKER RFGRIVNITS AMVKAPRSAM GLSTTARSGL TAISKALSVD AAPFNVTINN
MLPERFDTDR QQQMAKLAMQ FKKITYEEAR AEIAQSIAAK RMGQPSEFGD ACAFLCSAQA
GFISGQNLQL DGGSYPGLI