Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0130 |
Symbol | |
ID | 5453531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 143180 |
End bp | 143959 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640875690 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001411410 |
Protein GI | 154250586 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0000437524 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTCG GATTGCAGGG ACGGAAGGCG ATTATCTGCG CTTCGTCGCG CGGGCTCGGC AAGGCCTGCG CCATGGCGCT GGCACGCGAG GGCGCCGATG TCGTCATCAA CGGGCGGAAC GCGGAGGTGC TGGACCTTGC GGCGCATGAG ATTGCCGCCT CGGCCAAGGG ATCGGTGACG CCGATTGCCG CCGACATCAA CACCGAGGAA GGCCGGGCGC GGCTCGTTGC CGCCTGCCCG GAGGCCGACA TTCTCGTGAA CAATAATGAC GGGCCGCCGC CCGGCGCCTT TCAGCAATGG GACGAGGCCC AATGGCAGGC GGCGCTCAAC GCGAACCTGC TCGCACCCGT CTTCATGATC AAGGCGCTGA TCGAGGGCAT GAAGGAGCGG CGCTTCGGGC GGATCGTCAA CATCACTTCC GCGATGGTGA AGGCGCCGCG CTCGGCCATG GGGCTTTCGA CGACGGCGCG CTCCGGCCTT ACCGCGATTT CGAAGGCGCT TTCCGTCGAC GCCGCGCCCT TCAACGTGAC GATCAACAAC ATGCTGCCCG AACGCTTCGA CACGGACCGG CAGCAGCAGA TGGCGAAGCT CGCCATGCAG TTCAAGAAAA TCACCTATGA GGAAGCGCGC GCGGAAATCG CCCAGTCGAT TGCCGCCAAG CGCATGGGAC AACCTTCCGA ATTCGGCGAT GCCTGCGCCT TTCTCTGCAG CGCCCAGGCG GGCTTCATTT CCGGGCAGAA CCTGCAACTG GACGGGGGCT CCTACCCCGG CCTCATCTGA
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Protein sequence | MDLGLQGRKA IICASSRGLG KACAMALARE GADVVINGRN AEVLDLAAHE IAASAKGSVT PIAADINTEE GRARLVAACP EADILVNNND GPPPGAFQQW DEAQWQAALN ANLLAPVFMI KALIEGMKER RFGRIVNITS AMVKAPRSAM GLSTTARSGL TAISKALSVD AAPFNVTINN MLPERFDTDR QQQMAKLAMQ FKKITYEEAR AEIAQSIAAK RMGQPSEFGD ACAFLCSAQA GFISGQNLQL DGGSYPGLI
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