Gene Plav_0117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0117 
Symbol 
ID5454161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp128691 
End bp130109 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content62% 
IMG OID640875677 
ProductS-adenosyl-L-homocysteine hydrolase 
Protein accessionYP_001411397 
Protein GI154250573 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0499] S-adenosylhomocysteine hydrolase 
TIGRFAM ID[TIGR00936] adenosylhomocysteinase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00161182 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.625216 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAG CCGCCAAAGC CGATACCCAC GACTACGCCA TCAAGGACAT CAATCTCGCC 
GATTGGGGCC GCAAGGAGCT CGACATCGCC GAGACCGAAA TGCCCGGCCT CATGGCGACG
CGCGAGGAAT ACGGCGCGAA GAAGCCGCTC AAGGGCGCGC GCATCGCCGG CTCGCTCCAC
ATGACGATCC AGACCGCCGT GCTGATCGAG ACGCTGGCCG AGCTGGGTGC CGACATTCGC
TGGGCGTCCT GCAACATCTA TTCGACGCAG GATCACGCCG CTGCCGCCAT CGCCGCGCGC
GGCATTCCCG TCTTCGCGAT CAAGGGCGAG AGCCTTGAGG ATTACTGGGA ATACACCCAC
CGCATTTTCG AATGGTCGGA TGGCGGTGCG CCCAACATGA TCCTCGACGA TGGCGGCGAC
GCCACCCTCC TCATCCATCT CGGCAAGCGC GCGGAAGAGG GCGACGTCGC CTTCCTCGAA
ACGCCGGGCA ATGAAGAAGA GGAAATCCTC TTCGCCGCGA TCAAGCGCCG CCTGAAGCAC
AAGCCGGGCT TCTACAGCCA GATCGCGAAA AGCGTGCGCG GCGTCACCGA AGAAACGACG
ACCGGCGTCC ACCGTCTTTA CGAAATGCAG AAGAAGGGCA CGCTGCTCTG GCCCGCGATC
AACGTCAATG ACAGCGTCAC GAAGTCGAAA TTCGACAATC TCTATGGCTG CCGTGAATCG
CTGGTGGACG GCATCCGCCG CGCCACCGAC GTCATGATGT CGGGCAAGGT CGGCGTCGTC
GCCGGCTTCG GCGATGTCGG CAAGGGCTCC GCCGCCTCGC TTCGTCAGGC GGGTTGCCGC
GTCATCGTCA CCGAGATCGA TCCTATCTGC GCGCTCCAGG CCGCGATGGA AGGCTATGAA
GTGACGACGA TGGACGATGC CGCGCCGCGC GGCGACATCT TCGTCACGAC GACGGGCAAT
GTCGACGTCA TCACCGTCGA TCACATGCGG AAAATGAAGC ACCGCGCCAT CGTCTGCAAC
ATCGGTCACT TCGACAGCGA GATCCAGATC GGGGGCTTGC GCAATCTGAA GTGGCACAAT
GTGAAGCCGC AGGTCGACGA GATCGAATTC CAGGACGGCA AGCGCATCAT CCTGCTCGCC
GAAGGCCGCC TCGTGAATCT CGGCTGCGGC ACCGGCCATC CGAGCTTCGT CATGTCCGCC
TCCTTCACCA ATCAGACGCT CGCGCAGATC GAGCTCTGGA CGAAGCCGGA CGAGTACGAA
AAGAAGGTCT ACGTCCTGAA GAAGGAGCTC GACGAAAAGG TCGCGCGCCT GCATCTGGAA
AAGATCGGCG TGAAGCTCGA AAAGCTGAAC AAGAAGCAGG CCGACTATAT CGGCGTCGCC
GCCGAAGGCC CCTTCAAGCC GGATACCTAC CGCTACTGA
 
Protein sequence
MSQAAKADTH DYAIKDINLA DWGRKELDIA ETEMPGLMAT REEYGAKKPL KGARIAGSLH 
MTIQTAVLIE TLAELGADIR WASCNIYSTQ DHAAAAIAAR GIPVFAIKGE SLEDYWEYTH
RIFEWSDGGA PNMILDDGGD ATLLIHLGKR AEEGDVAFLE TPGNEEEEIL FAAIKRRLKH
KPGFYSQIAK SVRGVTEETT TGVHRLYEMQ KKGTLLWPAI NVNDSVTKSK FDNLYGCRES
LVDGIRRATD VMMSGKVGVV AGFGDVGKGS AASLRQAGCR VIVTEIDPIC ALQAAMEGYE
VTTMDDAAPR GDIFVTTTGN VDVITVDHMR KMKHRAIVCN IGHFDSEIQI GGLRNLKWHN
VKPQVDEIEF QDGKRIILLA EGRLVNLGCG TGHPSFVMSA SFTNQTLAQI ELWTKPDEYE
KKVYVLKKEL DEKVARLHLE KIGVKLEKLN KKQADYIGVA AEGPFKPDTY RY