Gene Plav_0084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0084 
Symbol 
ID5456933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp85148 
End bp86212 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content64% 
IMG OID640875643 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001411364 
Protein GI154250540 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATTG AACCTGGCTA TGTCGAGATC GTCGCTTCGG TCCTGAAGGA AGTGGGAAAG 
GATCCCGCCG CCTTCCCCCT GCCTCCCACC GGCGCCGTCT CGGAAGACGA GTTCCGCATC
ATGTCGGAAA ACCTGGTCGC CCTTGCCGAC GACAGGTCGA TCGCGCTTCG CCTCGGCGCC
AGCATGCATC TTGGCACACA CGGCCTCCTC GGCCATGCGA TCCTCAGCAG CAGAAGCCTC
CGGCAGGCGG CGGGGTTGCT GATCCAGTAC AGCCCCCTCC AGGGCACCAA GGGCCGCATC
CACCTCGCAT TCACGCCGGA TCACGCAGTT CTCACCTTCG AGCCGCCCTT CGCCGTGCGC
GGTGCACCGC ATTTTCTGGT CGAGCTTTTC TTCGCGGGCG TCCTCGCCGC CCTGCGCCAG
TTGATCGGTC CGTTGCCGGA TGAATGCCGC CTGGAACTCG CCTATGCGCC GGAAATGCCG
GAAGAAGTGT ATCGCCGCTT CCTCGGTGTC GAGGTTTCCT TCGGCCATTC GGTAAATCGC
TTCATCGGTC CGAACAGCCG CATCGACCAG CCGCTCTCGG CCGCCGCCAT TCCCGTTGCG
GAAATGTACC GTCTGCAATG CGAGCGCCTC CTGCGGGAGA TGAACGCGGC GGGCGGAATG
AGCGGCAATG TCCGCCGCAT GATCCTCGGC GCGCGCGGCC ATTTACCTGC TCTGGGAGAG
GCATCCCGCC ACCTGAACAT GAGTGAGCGC ACGTTAAGGC GCCGTCTTGC CGCCGAGGGA
ACGTCCTATC GCGGGATTGT CGACGATGTG CGCAACCATC TGGCGCGCGG CTATCTCGGC
GAAACGCCGC TCTGCGTCGC CGACGTCGCC TCGCTTCTCG GCTTCGACGA TGTCGCAAAC
TTCAGGCGCG CCTTCAAAAA ATGGAATGGC TGCACCCCGC AGGAATTCCG TCTGCGGAGC
GGTGCCCATA TTGGCACACG CCAGGCGCCG GAGAGGGAAC CTCGCCGCGG TGAACAATCG
CGCACGCAAT TGCACATGCC TCCACACCAT AAAACGTTCG TGTGA
 
Protein sequence
MRIEPGYVEI VASVLKEVGK DPAAFPLPPT GAVSEDEFRI MSENLVALAD DRSIALRLGA 
SMHLGTHGLL GHAILSSRSL RQAAGLLIQY SPLQGTKGRI HLAFTPDHAV LTFEPPFAVR
GAPHFLVELF FAGVLAALRQ LIGPLPDECR LELAYAPEMP EEVYRRFLGV EVSFGHSVNR
FIGPNSRIDQ PLSAAAIPVA EMYRLQCERL LREMNAAGGM SGNVRRMILG ARGHLPALGE
ASRHLNMSER TLRRRLAAEG TSYRGIVDDV RNHLARGYLG ETPLCVADVA SLLGFDDVAN
FRRAFKKWNG CTPQEFRLRS GAHIGTRQAP EREPRRGEQS RTQLHMPPHH KTFV