Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0084 |
Symbol | |
ID | 5456933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 85148 |
End bp | 86212 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640875643 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001411364 |
Protein GI | 154250540 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAATTG AACCTGGCTA TGTCGAGATC GTCGCTTCGG TCCTGAAGGA AGTGGGAAAG GATCCCGCCG CCTTCCCCCT GCCTCCCACC GGCGCCGTCT CGGAAGACGA GTTCCGCATC ATGTCGGAAA ACCTGGTCGC CCTTGCCGAC GACAGGTCGA TCGCGCTTCG CCTCGGCGCC AGCATGCATC TTGGCACACA CGGCCTCCTC GGCCATGCGA TCCTCAGCAG CAGAAGCCTC CGGCAGGCGG CGGGGTTGCT GATCCAGTAC AGCCCCCTCC AGGGCACCAA GGGCCGCATC CACCTCGCAT TCACGCCGGA TCACGCAGTT CTCACCTTCG AGCCGCCCTT CGCCGTGCGC GGTGCACCGC ATTTTCTGGT CGAGCTTTTC TTCGCGGGCG TCCTCGCCGC CCTGCGCCAG TTGATCGGTC CGTTGCCGGA TGAATGCCGC CTGGAACTCG CCTATGCGCC GGAAATGCCG GAAGAAGTGT ATCGCCGCTT CCTCGGTGTC GAGGTTTCCT TCGGCCATTC GGTAAATCGC TTCATCGGTC CGAACAGCCG CATCGACCAG CCGCTCTCGG CCGCCGCCAT TCCCGTTGCG GAAATGTACC GTCTGCAATG CGAGCGCCTC CTGCGGGAGA TGAACGCGGC GGGCGGAATG AGCGGCAATG TCCGCCGCAT GATCCTCGGC GCGCGCGGCC ATTTACCTGC TCTGGGAGAG GCATCCCGCC ACCTGAACAT GAGTGAGCGC ACGTTAAGGC GCCGTCTTGC CGCCGAGGGA ACGTCCTATC GCGGGATTGT CGACGATGTG CGCAACCATC TGGCGCGCGG CTATCTCGGC GAAACGCCGC TCTGCGTCGC CGACGTCGCC TCGCTTCTCG GCTTCGACGA TGTCGCAAAC TTCAGGCGCG CCTTCAAAAA ATGGAATGGC TGCACCCCGC AGGAATTCCG TCTGCGGAGC GGTGCCCATA TTGGCACACG CCAGGCGCCG GAGAGGGAAC CTCGCCGCGG TGAACAATCG CGCACGCAAT TGCACATGCC TCCACACCAT AAAACGTTCG TGTGA
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Protein sequence | MRIEPGYVEI VASVLKEVGK DPAAFPLPPT GAVSEDEFRI MSENLVALAD DRSIALRLGA SMHLGTHGLL GHAILSSRSL RQAAGLLIQY SPLQGTKGRI HLAFTPDHAV LTFEPPFAVR GAPHFLVELF FAGVLAALRQ LIGPLPDECR LELAYAPEMP EEVYRRFLGV EVSFGHSVNR FIGPNSRIDQ PLSAAAIPVA EMYRLQCERL LREMNAAGGM SGNVRRMILG ARGHLPALGE ASRHLNMSER TLRRRLAAEG TSYRGIVDDV RNHLARGYLG ETPLCVADVA SLLGFDDVAN FRRAFKKWNG CTPQEFRLRS GAHIGTRQAP EREPRRGEQS RTQLHMPPHH KTFV
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