| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0074 |
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| Symbol | |
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| ID | 5455868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 75821 |
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| End bp | 76768 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640875633 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001411354 |
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| Protein GI | 154250530 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.557722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.8398 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGTGC TTGACGGCCT GACATGGATG ATCGCGGGAC TTGCCCTGGC GGCAGGCGCG
CTCGTCTTTG TCTCGTCACT TACGCTTCTC GTCCGCCATC GCGAGGTTTC GGCCCGGCTG
TCGCTTCTCT TCACGCCCGA ACGTGAATAC GGCACGCTGA CGGAGACGGC ACTTGTCCTG
CTGGAACGTC TCGGCCGCCG CATAGAAGGA ACGCGCGTCA ATCGGGAGCT TCGGCAGCTT
GCTCTCCGCG CCGGCTTCTT CCAGCCGTCC TCCGTTTATG TCTTCGTCGC CTTGAGATAT
GGCGTCGCCT TGGCGATCGG CCTTGTCATC GTCCTCGCCC GTTCGGATGG CGGTGTACCC
GCCGTCGCCG ACATTCTCTA CGGCGTTTTC TTCGGATATC TTTTCTACCG CTATGTCCTC
ATCGCGCTCG GCGTCTATGC GGATCGCCGC GCCAACACCA TTCGCCGCGA GCTGCCGCCT
GTTCTCGACA TCATGTTGAT GGCGCTCGAC GCGGGAGTGA GCGTCGACCA GTGCATGCGC
TACGTGGCAG GTGTCGTCCG CCGCACCGCG CCCGTCACCG GCAAGGTATT GCGCCGCCAC
ATAGCCGACA TCGACGCAGG CATGCCCTAT GACGCCGCAT TGGATCGCCT GGGCCAGCGG
CTGGGTCTCG ACGAAGGGCA GGATCTTGCG GCGACCATCA AGCAGGCCTT GTTTCAGGGC
GGCGAGCTCA GCACTACCTT GCGCCGCTTC TCCGTGGATC TGTCCGACAA GCGCATGGGC
ATGGCGCGCG AACAGGTTGG CCGCAAGGCG CCGCAGCTCA CCCTGGTGAT GATATTGTTT
TTCATGCCGG TGCTGTTGAT CGTGCTGGCA GGCCCCGCAG TGGTCACGCT GCAGGGCGCG
CTGGAGGTTG CGGGCGAACA GATAGGCAAG CGGGGCAACG CGCCATGA
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| Protein sequence | MAVLDGLTWM IAGLALAAGA LVFVSSLTLL VRHREVSARL SLLFTPEREY GTLTETALVL
LERLGRRIEG TRVNRELRQL ALRAGFFQPS SVYVFVALRY GVALAIGLVI VLARSDGGVP
AVADILYGVF FGYLFYRYVL IALGVYADRR ANTIRRELPP VLDIMLMALD AGVSVDQCMR
YVAGVVRRTA PVTGKVLRRH IADIDAGMPY DAALDRLGQR LGLDEGQDLA ATIKQALFQG
GELSTTLRRF SVDLSDKRMG MAREQVGRKA PQLTLVMILF FMPVLLIVLA GPAVVTLQGA
LEVAGEQIGK RGNAP
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