Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0072 |
Symbol | |
ID | 5455261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 73647 |
End bp | 74873 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640875631 |
Product | type II secretion system protein E |
Protein accession | YP_001411352 |
Protein GI | 154250528 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.928138 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.608061 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCCA TGCAGCCATA TACGCTCGGC ACGGATAGTC CTCCCAGCGA CATCGGCATT TCCGACCGCT ACCAGGAGAT CAAGTTTCGC GTTTTCGATC TGACGCTGGA ATATCTGGAT CAGCAGGGCG TCGAAGGAGA GGCGATCTCC TTGACCGCGC TGCAGGATGA AATAGCCCGT GCCATCGCAG TCGTTCTCAT GTCGCGAGGC ATCGCGCTGA ACATGCGCGA GCGCGCGCAG CTCATCGAGG ACGTGCAAAA CGAAATCGTC GGCTTCGGGC CGCTGGAGCC TCTGCTTCGC GATCCGACGA TAGACGACAT CATCGTCAAC GGACCCGCCC GCATCTATGT CGAACGGCAT GGTGAGCTTG AACTGGTGCA AACCCGGTTT CGGGACACCA CTCACCTGAT GAATGTGATC CAGCGGATCG TCAGTCCGAT CGGGCGCCGC GTGGACGAAG GCACGCCTTA TGTGGATGGG AGATTGCCCG ACGGCTCCCG TGTCAACGTG ATCATTCCGC CTGTCGCGCT GGACGGTCCG ATTCTCTCGG TCCGCAAGTT CAAGCATATT CCGCTGACGG GTGACGATCT CGTGCGCAGC AATATGATGA CGCCCGAGAT GTTGAAATTT CTCTCCGGTG CGGTGCGGGG AAAGCGCAAC ATTCTGATCT GCGGCGGTAC GGGCTCCGGC AAGACCACGC TGTTGAATGT CCTCAGTTCC TATATCGGCA TAAAGGAACG GCTCGTCACG ATCGAGGATG CGGCCGAGTT GCAGCTCCAG CAGTCTCATG TTGTCCGTCT GGAAACGAGG CCCTCCTCCC CCGATGGCGC GAACGAGGTC ACGGCGCGCG ATTTGCTGCG CAACGTCCTG CGCATGCGCC CGGACCGGAT CATTCTCGGC GAAGTCAGGT CGAGTGAGGC AATCGAAATG CTGCAGGCGA TGGGCACCGG GCATGACGGC TCCATGGCCA CGCTCCACGC AAACGGCCCG CGCGATGCGC TTGAGCGTCT CGAAATGCTG ATCGGCCTGC ACGGGTTCTC GGCCGATCTT CAGGCTGTCA GGCGCTTCAT CGCGGGCGCC ATTCACATCG TGGTGCAGAC CGCGCGGCAG TCCGACGGCA AGCGGCGAAT AGTTTCAATA TGCGAAGTGA CGGGCATGGA AGGTCCGACC TATTCCATGC GCCAGATATT CTCGGATGAG GAAGTCGAGA CGAAGCGGGT TGTCTAG
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Protein sequence | MKSMQPYTLG TDSPPSDIGI SDRYQEIKFR VFDLTLEYLD QQGVEGEAIS LTALQDEIAR AIAVVLMSRG IALNMRERAQ LIEDVQNEIV GFGPLEPLLR DPTIDDIIVN GPARIYVERH GELELVQTRF RDTTHLMNVI QRIVSPIGRR VDEGTPYVDG RLPDGSRVNV IIPPVALDGP ILSVRKFKHI PLTGDDLVRS NMMTPEMLKF LSGAVRGKRN ILICGGTGSG KTTLLNVLSS YIGIKERLVT IEDAAELQLQ QSHVVRLETR PSSPDGANEV TARDLLRNVL RMRPDRIILG EVRSSEAIEM LQAMGTGHDG SMATLHANGP RDALERLEML IGLHGFSADL QAVRRFIAGA IHIVVQTARQ SDGKRRIVSI CEVTGMEGPT YSMRQIFSDE EVETKRVV
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