| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0069 |
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| Symbol | |
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| ID | 5456534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 70095 |
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| End bp | 71048 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640875628 |
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| Product | SAF domain-containing protein |
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| Protein accession | YP_001411349 |
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| Protein GI | 154250525 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.723058 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCAG CTTGGGGCGC TGCCGGTCGG TGTGAGGGAG AAGGCAAGAT GAATCTCGTG
CAGCGAATGC AGCGCAGTCC GTTGCTTCTC CTCGGGCTTG GCATTGCCCT CATCATCGCG
GCGCTTGCTC TCATCTGGTC CAACATTTCC AGCAGGGACG CGACGTCCGC GCGCGCGCCG
GCAGGGGTTG ACGACGGCAG GGGCCTCGCC GCGGAAAACG CCGTAACGGT CCTTGTCGCG
GCGCGCGATG TCGTCCGGGG GCAAAGAATA TCCGAAGCCG ATTTGGGTCT CCGCAGAATG
GAGGGTCCGG CGCCCTCCGG CAGCTTTGCC GACGCGCAAT CGGCAATCGG CCGCGTGGCG
ACCGACGATA TCCGTTCTTC GCAGATTATT TTTCAGCAGG CGCTGAGTTC GGAGCCGGCG
GCAGCGGGCA TCGCCGCTCT GGTGCCGGAG GGGCAGCGTG CCTTTGCGAT TCGCATTGCG
GAAGAAGACA TAGTCGGCGG CTTTCTCCAG GCGGGAGACA GGGTGGATGT CTTTGCCACT
TTCCCGGGCG CCGTCTACGG GCAGCAAGGG GGCCTCGGTC AGCGCGAAGG CGATCAAAGC
AAAAGCGCGC TTCTGCTGCA GGATATGCAG GTGCTGGCCG TCGGGCCGGC GCTCTCGCAT
CAGGCCGGGC AGGTGAATGC CGGTGCGCGA ACGGTCACCG TCGCCGCGCC GCCGAATGCG
CTGGCGCGTT TGGCGCTTGC CGGCCGGCTC GGCCACATCA CGCTTGCCAT CCGCAATCCG
GGCGACCGCG AAGTCGCTCC CGGCGAGCTT GTTGCGCTTG ATGATCTGCG TCCGGCGGGG
GCGGCCGTTG CGCCGGTAGA GGCAAAATCC GAAGGCGAAT CCGGCCGTCC CGGGGGACAC
CGGATTACAA TTTACTCCGG CGCCAATCAA AGCGTCGTCG AAACGCCGCG CTGA
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| Protein sequence | MRAAWGAAGR CEGEGKMNLV QRMQRSPLLL LGLGIALIIA ALALIWSNIS SRDATSARAP
AGVDDGRGLA AENAVTVLVA ARDVVRGQRI SEADLGLRRM EGPAPSGSFA DAQSAIGRVA
TDDIRSSQII FQQALSSEPA AAGIAALVPE GQRAFAIRIA EEDIVGGFLQ AGDRVDVFAT
FPGAVYGQQG GLGQREGDQS KSALLLQDMQ VLAVGPALSH QAGQVNAGAR TVTVAAPPNA
LARLALAGRL GHITLAIRNP GDREVAPGEL VALDDLRPAG AAVAPVEAKS EGESGRPGGH
RITIYSGANQ SVVETPR
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