Gene Plav_0058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0058 
Symbol 
ID5453969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp60579 
End bp61100 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content67% 
IMG OID640875617 
ProductMgtC/SapB transporter 
Protein accessionYP_001411338 
Protein GI154250514 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.460783 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCG GCTATCTTTT TGAGACCTAC GGCGCGCTCG ACTATCTCGC GCGTCTGGGG 
GCTGCGGCGG CGATGGGCGG TGTCATCGGC CTCGACCGCG AGGCGCATGA CCGCCCGGCT
GGCCTCCGCA CGCATATGAT GACGGCGATG GCCGCCGCGA TCTTCACCAT TCTCACACTT
GAACTCCATG AAGAGTTCGT GCTGCGCGGT GCGCATGGCA CCGCCGACCC GATCCGCATC
ATCGATGCGG TGACGGCCGG CGTCGCCTTC CTCGCGGCAG GCGCCATCAT CCATATGCGC
GGCCAGGTGC GCGGCCTCAC CACCGGCGCG GGAATGTGGC TTGCCGGCGC GCTGGGCGTC
GCGTGCGGCA TGGAAAAATA CATGCTTGGC GGGGTAGCCC TGGCGCTCGC CGCCATCGTT
CTCATGGCTT TGCGTCCTCT CGAAGCGCGC CTGAGCCATC GCCGGGGGAA TGCGCGGGAA
AATGAAGACC AGGCGGAACG GGATGACGCC CCTCCCCGGT AG
 
Protein sequence
MDIGYLFETY GALDYLARLG AAAAMGGVIG LDREAHDRPA GLRTHMMTAM AAAIFTILTL 
ELHEEFVLRG AHGTADPIRI IDAVTAGVAF LAAGAIIHMR GQVRGLTTGA GMWLAGALGV
ACGMEKYMLG GVALALAAIV LMALRPLEAR LSHRRGNARE NEDQAERDDA PPR