Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1564 |
Symbol | |
ID | 5451753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | - |
Start bp | 1704070 |
End bp | 1705806 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 640875339 |
Product | extracellular solute-binding protein |
Protein accession | YP_001411064 |
Protein GI | 154250239 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00697686 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGG TTCTCGTAAC GCTTCTTGTT TCTTTATTTG TATTCTTCGC TTTTGCTGCA AGCTACATCG GTGCAGATGC AACGGGTAAA AAAGGTGGGA CACTCATTCT TCCAACACTT AGTGGTCCAA GAACAGTTAA CGACACAGTG TCCAAAGAAA CAAGTTCTTC TGATGTCATT GCCATGTTCA TGAGCTGGGG TGGAACACTT ATCGAAAGAG ATGCGAGAGA CGGTAAGTTC TATCCAGCAC TCGCGGAAAA ATGGGATGGT CCACGTCTAA CAAAAGATGG CGGTATGGAA ATTATATGGT ACCTTAGAAA AGGTGTAAAG TGGAGTGATG GTACACCATT CACAGCAGAT GACGTTGTCT TCACACTCAA CGATATTTAC ACAAACCCAG ATATCCCAAG TTCATTCAAA GATGTCATAA AGAGTACAAA TAATTACTTA CCAAAAGCAA CAAAGATAAA CGATTACACA GTTAGAATGT ACTATCCAGA ACCATTTAGG CTTGCTCTCA GATACCTTGG CGGAATGTAC ATATTCCCAA AACACAAGGC CGAAAGCTGG GTTAAAAACA AAAAATTCGC AGAATTCTGG ACAGTCGATT CAATCAATAA GAAAGAAATT GTTGGTTTAG GACCATTCAT TCCAGTAGAG TATGTACCAG ACCAATACGT AAGATTTGTA GCAAATCCGA ATTACTGGAA GAAAGATAAA AACGGAACAC AATTGCCATA TTTGAAAGAA GTAGTTTACA AAATTATATC TTCACAAGAT GCACAAAAAT TGGCATTTGA AAAAGGAGAA GTTGATATTT ACTCACCAAG AGGTACAGAA TTTAACTACT TTAAAGAAAA CGAAAAGAAA TTCAACATAA CCGTTCTCTC ATATGGTCCA GCATATGGTA CACAATTCAT AACATTCAAC TGGAACAACA AAGACGAGGC AAAGAGAGAC TGGTTCAGAA ATGTACACTT CAGAAAAGCA GTCGCTTACG CAATGGATAA GAAAAAGATG ATTGATACAC TCTTCAACGG TCTTGCAATT GAACAATGGT CACCAGTTTC AATGGCTTCA CCATTCTACA ACGAGAAAGT CACAGTAAAA TATCCATACG ATTTAAATAA AGCAAGAGCA GAACTTAAAC TCGGTGGATT TAGCTGGGAC AAGAATGGAA AACTCATAGA CAGCAAAGGT AGACCAGTCA AATTCACAAT CGAAACAAAC GCCGGTAACA CAATCCGTGA AGGTATAGGT AACATTATAG CAGCTGCTCT AAAACAACTT GGTATGGATA TCACATTTGT ACCTGGTGAT TTCAACACAC TTGTCAACAG AATGCTCAAC GTTGGCGACT GGGATGCTAT AATCATTGGT CTAACAGGTG GAGATGAACC ACAAGGTGGA AGAAACGTAT GGGCACTTGA CGGTTCGTTA CACTTCTGGA ACCTCTCGCC AGAAAATGCA AACTGGGTTG ATCCAAAAAT TTACTGGGTA CCAGATTTTG AAAAAGAAAT TGATAAGATA TTCAAAGAAA ACGTTAGAAT CCTTGACGAA AATGTTGTGA AAGACTACTG GGCAAAATTC CAAAAACTCG CATCTGAAAA TATACCACTT ATTTACACAG TTAACAGCTT AAGACTCTTT GCATGGAGAA ATACAATTAA GAACGTTAAA ATAACACTCT TGGGAGGAAC AACTTGGAAC CTTGACTGGC TCTATAAAGA AGAATAA
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Protein sequence | MKKVLVTLLV SLFVFFAFAA SYIGADATGK KGGTLILPTL SGPRTVNDTV SKETSSSDVI AMFMSWGGTL IERDARDGKF YPALAEKWDG PRLTKDGGME IIWYLRKGVK WSDGTPFTAD DVVFTLNDIY TNPDIPSSFK DVIKSTNNYL PKATKINDYT VRMYYPEPFR LALRYLGGMY IFPKHKAESW VKNKKFAEFW TVDSINKKEI VGLGPFIPVE YVPDQYVRFV ANPNYWKKDK NGTQLPYLKE VVYKIISSQD AQKLAFEKGE VDIYSPRGTE FNYFKENEKK FNITVLSYGP AYGTQFITFN WNNKDEAKRD WFRNVHFRKA VAYAMDKKKM IDTLFNGLAI EQWSPVSMAS PFYNEKVTVK YPYDLNKARA ELKLGGFSWD KNGKLIDSKG RPVKFTIETN AGNTIREGIG NIIAAALKQL GMDITFVPGD FNTLVNRMLN VGDWDAIIIG LTGGDEPQGG RNVWALDGSL HFWNLSPENA NWVDPKIYWV PDFEKEIDKI FKENVRILDE NVVKDYWAKF QKLASENIPL IYTVNSLRLF AWRNTIKNVK ITLLGGTTWN LDWLYKEE
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