| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1563 |
|---|
| Symbol | |
|---|
| ID | 5453253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1702945 |
|---|
| End bp | 1703910 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640875338 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001411063 |
|---|
| Protein GI | 154250238 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0231928 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTAAGT ACATAGCACG CAGGCTTATA ATACTTCTAC CAGAGTTATG GATAATAACA
GTAATTGTTT TTACCCTCAT GCAACTATCC CCTGGTGATT TTTTAGATCA GTACAGGCTT
GACCCTTCTG TCTCAAAGGA GACATTGCAA GCGATGGAAA AAGAACTTGG ACTTGATAAA
CCAGCCGTAG TACAATATTT TTACTGGTTT GGAAAATTAC TTAAACTAGA TTTTGGCTAC
TCTTTCTACT ATAGACGTCC TGTAGCAAGT CTTATATCAG AAAGGCTACT TGGAACTTTT
GTACTATCAC TTTATTCATT TGTTATTTCA TGGATAATCG GTGTTGTATT AGGTGTAGTT
TCAGCGTTAA AAAAATATAC CCTTACAGAT AAAATACTAA CAGTTATAGC ATTTAGTGGA
TTAGCGCTTC CCGGATTTTT CCTTGCGCTT GTTTTACTTT ACATGGCCGC AAGAACAGGC
TGGTTCCCAA TAGGTGGAAT GTACAGTCCC GAAACATCTC GACTCGATGT CTGGAATGCA
TTTAAAGATA TCTTTTGGAG GTTGCAATTA CCCGCTTTTA CACTTACGTT TGGTGGTTTT
GCCGGTTTAA TGAGATACCA AAGAGGTACT CTTCTTGATG TTCTTAATGA AGATTACGTA
GAATTTGCAA GAGCGAAAGG AATGCCCGAA AGGGTTGTTA TATATAAACA TGCATTACGA
AATGCTATTA ACCCCCTTGT TACAATGTTT GGTGGTAGTT TGGCAGGATT ACTCAGTGGT
GCAGTTATTA CAGAAACAAT CTTCTCATGG CCTGGACTTG GAAGGTTAAC CTATCAAGCC
CTTCTACAAA AAGATTATTA CGTTGTTATG GCAAGTACAG TAATTAGTAC AGTTTTACTT
ATAATCGGTA ACCTCGTTGG TGATATACTC CTCGCAGCAG TTGATCCAAG AATTAGATAC
GAATAA
|
|---|
| Protein sequence | MIKYIARRLI ILLPELWIIT VIVFTLMQLS PGDFLDQYRL DPSVSKETLQ AMEKELGLDK
PAVVQYFYWF GKLLKLDFGY SFYYRRPVAS LISERLLGTF VLSLYSFVIS WIIGVVLGVV
SALKKYTLTD KILTVIAFSG LALPGFFLAL VLLYMAARTG WFPIGGMYSP ETSRLDVWNA
FKDIFWRLQL PAFTLTFGGF AGLMRYQRGT LLDVLNEDYV EFARAKGMPE RVVIYKHALR
NAINPLVTMF GGSLAGLLSG AVITETIFSW PGLGRLTYQA LLQKDYYVVM ASTVISTVLL
IIGNLVGDIL LAAVDPRIRY E
|
|---|
| |