| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1499 |
|---|
| Symbol | alaS |
|---|
| ID | 5452125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1627828 |
|---|
| End bp | 1630431 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640875272 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_001410999 |
|---|
| Protein GI | 154250174 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA TGACAAGTGA TGAAATTAGG GAAGCATATC TTAGCTTTTT TGAGAAAAAA
GGGCACAAAA GATTACCAAG CGCATCTTTG ATTCCAGACG ATCCACAATT GATGTTTACA
GTAGCAGGCA TGGTACCATT TAAACCAATT TTTTGGGGCA AAGTTGATCC AGTATATCCA
AGAGTTACAA CTTGCCAAAA ATGTGTAAGA ACAAATGATA TAGAAAATGT TGGTAGAACA
CCAAGGCATC ATACTTTCTT CGAAATGCTC GGTAATTTCT CTTTTGGAGA TTACTTTAAA
CAAGAAGCTA TTGAATGGGC TTGGGAATTC GTGACCAAAG TACTAGAGAT GCCAGAAGAA
AAATTATGGG TTTCCGTTTA CGAATACGAT GACGAAGCTT ACGAAATTTG GCGCAAGCTA
GGTGTACCTG AACGAAAAAT AGTAAGAATG AGCAAAGAAG ATAACTTTTG GGGACCTGCA
GGTCCAACAG GTCCATGTGG TCCATGCTCT GAAATATTCT ACGACACGGG CGTTGAAGTC
CCGGTACCAG AAGGTCAGGA CCCAACACCA GCAAATACAG ATGGAAGATA CATAGAAATT
TGGAATCTTG TCTTCACTGA ATTTTACCAA GATGAAGAAG GAAATCTTCA TCCACTCCCA
AGAAAAAATA TAGATACTGG CGCTGGTCTT GAAAGAATCT CCGCAATGAT GCAAGGAGTT
TATTGGAACT TTGATACAGA TTTGTTCAAA CCCATAATAG AAAGCATTGA AAATGTACTT
AAAGTATCTT ATAAATCCGA CAAAGTAAAA GACGTTTCTA TAAGGGTTAT CGCCGACCAT
GTAAGGTCTG TCACGTTTAT GATTGCCGAT GGCGTCTTAC CTTCAAATGA AGGGAGAGGT
TATGTATTAA GAAGGGTACT TAGAAGAGCT CTTAGGCACG GAGTATTATT AGGAGCAAAA
GAACCATTCT TATACAAAAT CGTCGATAGT GTTGTTCAAA AAATGGGGAA AATTTACCCA
GAAATCGTTG AAAAGCAAAG CTTTGTGGAA AATATAGTAA AAAGCGAAGA GTTGAAGTTT
ATCAATAATC TTTCCAGAGG ACTTGAAATA GTGCAAAAAA TAGTTACCAC TTCTGGAAAA
ATAAGTGCAG AAGACGCTTT TAAATTGTAC GATACATATG GTTTTCCAAT TGATATACTC
AGAGACATTG CTACAGAAAA TGGATACGAA CTTGATGAAA AAGGATTTGA AAAATACTTA
GAAGAGCAAA GAGAAAGGTC AAGAAAAGCT CAAGGTGAAG TAGAATTTGC CCAAAAAACA
GGGTATGAAA ATTTAGGGAT AGAAACCGTA TTTGTTGGTT ACGATACACT AGTATCAGAA
TCTTCTGTAT TGAAAATAAG GGTAAATGGA GAATTTGTTG AAAAAGCCGA GGGCAACGAT
TTAGAATGCG AATTAATACT TGATATAACC CCATTTTATG CTGAGAAAGG TGGCCAAGTA
GCAGATACTG GAGTAATAAA ATCCCAGGAT GGACTTTTCA CGGTAGAATA TGTTTATTCA
CCAGTTGAAG GTATAATCGT ACATAGAGGT AAGCTAAATG GAAAAATATC AGTAAATGAA
AAAGTACAAT CTCAAGTTGA TGAAATAAAG AGAAAATCAA CGATGAGAAA TCATACTGCA
ACCCACATTT TGCACTCAGC CTTAAGAAAA GTTCTTGGCT CACATGTAAG GCAAGCTGGG
TCTTTGGTTG AACCAACAAG ACTAAGATTC GACTTTACAC ATTATCAAGC ATTAACAAAA
GATGAAATTA CAAAAATAGA AAACATAGTG AACGAAGTAA TTCTAAAAGC TATACCTGTA
GTCACAGAAA TTAAAAGCTA CGATGAGGCT GTCAAAGAAG GCGCAATGGC ATTATTCGAA
GAAAAATATG GTGATTTTGT AAGAGTCGTA AAAGTTTCCG ATTTTAGTGA AGAATTATGT
GGTGGTACAC ATGTAAAAAA TACCGGTGAA ATAGGGCTAT TTAAGATAGT ATCAGAATCT
GCTGTTAGTG CTGGGGTTAG AAGAATTGAA GCTATAACAG GTTTAAATTC TCTTGAATAT
TTGAGAACAG ATGAGGAACT TTTCGAAAAA TTAAAACTTT TGCTCGAAGC TCCAAAAAGT
GAAATTGTCG AAAAAATACA AAAAATTTTG GAAGAGAAAA AGAACTTAGA AAAAGAAATA
CAGGAGATAA AGAGAAAACT CATAAATCCT GAAGAGATCG CTAAAAAAGT TAAAGAATAC
AACAATATAA AATATGTAGT CTCTGTCCTT GAAGATGTCG AACCTGATAT CTTAAAAGAT
CTTATAGATA ACATATCAGA TAGAATAAAA GGTATTGTAT TACTTATATC TAAAATGAGT
GATAAAATAA TTGTGACCGT AAAAGTTCCA AAAGAACTTA CTCAAGATTA TAACGCCGGA
AACATAGCGA AATTGGTTTC AAAAGTACTT GGTGGTGGTG GCGGAGGTAG TCCAACATTT
GCTCAAGCTG GTGGAAAGTT AATTGAGAAA ATAGACGAAG CCACTGAATT ATTCGAAAAA
ATAATCAGAA AGGAAGTGCA GTAA
|
|---|
| Protein sequence | MKFMTSDEIR EAYLSFFEKK GHKRLPSASL IPDDPQLMFT VAGMVPFKPI FWGKVDPVYP
RVTTCQKCVR TNDIENVGRT PRHHTFFEML GNFSFGDYFK QEAIEWAWEF VTKVLEMPEE
KLWVSVYEYD DEAYEIWRKL GVPERKIVRM SKEDNFWGPA GPTGPCGPCS EIFYDTGVEV
PVPEGQDPTP ANTDGRYIEI WNLVFTEFYQ DEEGNLHPLP RKNIDTGAGL ERISAMMQGV
YWNFDTDLFK PIIESIENVL KVSYKSDKVK DVSIRVIADH VRSVTFMIAD GVLPSNEGRG
YVLRRVLRRA LRHGVLLGAK EPFLYKIVDS VVQKMGKIYP EIVEKQSFVE NIVKSEELKF
INNLSRGLEI VQKIVTTSGK ISAEDAFKLY DTYGFPIDIL RDIATENGYE LDEKGFEKYL
EEQRERSRKA QGEVEFAQKT GYENLGIETV FVGYDTLVSE SSVLKIRVNG EFVEKAEGND
LECELILDIT PFYAEKGGQV ADTGVIKSQD GLFTVEYVYS PVEGIIVHRG KLNGKISVNE
KVQSQVDEIK RKSTMRNHTA THILHSALRK VLGSHVRQAG SLVEPTRLRF DFTHYQALTK
DEITKIENIV NEVILKAIPV VTEIKSYDEA VKEGAMALFE EKYGDFVRVV KVSDFSEELC
GGTHVKNTGE IGLFKIVSES AVSAGVRRIE AITGLNSLEY LRTDEELFEK LKLLLEAPKS
EIVEKIQKIL EEKKNLEKEI QEIKRKLINP EEIAKKVKEY NNIKYVVSVL EDVEPDILKD
LIDNISDRIK GIVLLISKMS DKIIVTVKVP KELTQDYNAG NIAKLVSKVL GGGGGGSPTF
AQAGGKLIEK IDEATELFEK IIRKEVQ
|
|---|
| |