| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1436 |
|---|
| Symbol | |
|---|
| ID | 5452457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1557270 |
|---|
| End bp | 1558259 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640875209 |
|---|
| Product | sugar transferase |
|---|
| Protein accession | YP_001410937 |
|---|
| Protein GI | 154250112 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0467092 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCTCG TTGGCTGGAG AGGGCTTGTT TTATATGTCT TCAAAAGAGT GCAGGGTGTA
AAGCATGTGA TGGTAATAGG TTATATGCCA AAGGCACAGG AGTTTGCCCA AAAGCTTCAA
AACATATCAA AAGGGTGGAT TGATGTAAAA TATGTTCTGG AGCCCCAAAC TGCTGAAGAT
CTTGTACAGT ATATAAAAGT GGTTGATACA ATCTATCTTT ATTCAAAAAT GGATGAGAAT
TTGAAAAGCG AGATTATTAA AAAGGCAATA GAGTTCAAAA AGCACATTTT CATTGCGCCC
GACTTCAGGG ACATTCTGGT GTCGCGCGCA AGGGTTATTC AGTTTGACGA TGTTGCAACA
CTTTCAATCG AGCAGCCGGA GCTTACATCC GAGCAAAAGC TAATTAAAAG AGTGTGCGAT
GTTCTCCTTG CCTCTGTTGC GCTGGTTGTT TCTTTTCCTA TTATGATTCT GATTGCAATT
GCCATAAAAC TTGATTCTGA AGGACCGGTA ATCTACAGAC AAAAAAGGGT TACAGAAGGC
GAAAGAGAGT TTTACGTTCT GAAGTTCAGG ACAATGGTAA AGGATGCTGA GAAGATGACA
GGACCTGTCC TGGCAACCGA GAATGACCCG AGGATAACGA GGGTGGGGCG GTTTTTGCGC
GCAACAAGGC TTGATGAGAT TCCTCAGCTT GTAAATATTC TAAAAGGTGA GATGAGCTTT
ATTGGACCAC GACCCGAGCG CCCATACTTT GTTGAGCAGT TTAAAAAACT GTATCCGGAG
TATTCTCTTC GCCACAATGT AAAGGCAGGG CTAACAGGGC TTGCACAGGT TTACGGCAAG
TATGCAACAA GCCCGGAAGA TAAGCTAAGG CTTGATCTGA TATATATAAA AAATTACTCT
GTGTTTCTTG ATATTAAGAT TTTGCTTCTG ACTTTAAAGA CAATCTTTAC AAAAGAGGCG
GCAGAGGGGG TAAAAAACCA GAAACAATAA
|
|---|
| Protein sequence | MLLVGWRGLV LYVFKRVQGV KHVMVIGYMP KAQEFAQKLQ NISKGWIDVK YVLEPQTAED
LVQYIKVVDT IYLYSKMDEN LKSEIIKKAI EFKKHIFIAP DFRDILVSRA RVIQFDDVAT
LSIEQPELTS EQKLIKRVCD VLLASVALVV SFPIMILIAI AIKLDSEGPV IYRQKRVTEG
EREFYVLKFR TMVKDAEKMT GPVLATENDP RITRVGRFLR ATRLDEIPQL VNILKGEMSF
IGPRPERPYF VEQFKKLYPE YSLRHNVKAG LTGLAQVYGK YATSPEDKLR LDLIYIKNYS
VFLDIKILLL TLKTIFTKEA AEGVKNQKQ
|
|---|
| |