| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1340 |
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| Symbol | |
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| ID | 5452800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | + |
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| Start bp | 1440381 |
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| End bp | 1441805 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640875116 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001410844 |
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| Protein GI | 154250019 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGTG ACCGTGTAAG ACTCATAATT TCATTAGCAC TACTGGTCGC AGCCGTTGTG
GCATTGTTAT TACCAGGGGG AAGACAAGCA ACAGGTATTG CTAAGCTTTT CAGTAGAATC
AAACTCGGTT TGGACCTCAG CGGTGGTGTA AGGCTTGAGT ACAGAGTTGA TATTGAAAAA
GGTGTAGAAA ATCCAAGTGC TGTAGTTGAC GATGTGTGGA CAGTTCTCAG AAATAGGCTT
GACTCGGCTG GATATACGGA AGCAGTAGTA AAGAAAAGTT TCAGGGAAAA TAATTCATTT
ATCATAGTTG AAATTCCTGA TGCAACTGAC ACATCATTTG CTGAAAAATT GGTTGGTTCA
ACCGGTCTTT TGTGGTTTGG TCAGGCAATC GACGAAAGAG ATTACGATCC AACTACTAAT
CCTGATGATG TGAACCTTGC TACTAGGGAA GGAGCACAAT GGTATTCAGA TAAAGACGGA
AAAAAATGGT ACTTAATAAA GAAAGAAATC AATAACAGAA AAGATCTTGT CCTTTCTGGT
CCAAGAATTT CCGAAGCAGT TCCTACTGTT GACCAAAAAG GTGTTGCAAA TTATGTTGTA
TCGTTCACCT TGGCAAGAGA ATACGTTGAA GTATTTAAAA ATATAACAAA AGAGCTTTAT
GTACCAGAAC AAGTCCTCAA TAGTGGTACG ACACAATATC AAATGGCTTT AAAGAAGAGA
CTCGCAATAG TACTTGATGA CAAAGTTCAA TTTGTAGGAT TTGTTGTAAG CCCAATAGAA
GATGGTAAAG GACAGATTAG AGGTAATTTC ACATTTGACG AAGCTAAAGA GCTTGCAGCG
ATTTTGAGAA GTGGGGCACT ACCTGCAAGA CTTGAGAAAA CTTCTGCAAG CCTCGTTTCA
CCACTTCTTG GTAAAGATGT ACTTAAACAA TCTTTAAACG CAGGTCTAAT TGGCGCGGTG
TTAGTAATTA TTTACATGCT TGCTTTCTAT GGTGTTATGA GCTTTGTTGC AGTTATAGGT
ATATTCTACG CACTTGCACT AATATTCGGT TTCTTGGCCG GTACGGGCGC AATATTAACA
TTACCAGGTA TCGCAGGTAT AATCTTTACA ATAGGTACAC TTGTTGATGG AAATATAATT
ATTTACGAAA GGATAAAAGA AGAAATCAGA GGTGGAAAAA CACCAAAAGC AGCTATAGAA
GTTGCATTTT CAAGATCTTT CTGGACACTC TTTGACGCAA ACCTAACGAC TATAATCGCA
GCTCTCTTCC TTTACTACTT TGGTACGGGA ACAATAAAAG GCTTTGCTAT AACAACAATC
GTTGGTATCT TCTCAGCAAT GTTCATGAAT TTGGTATTCA GCAAATTCTT ACTTGACGCA
ATGGCTGGAG CAATTAGAGT GAGAAAGACA GGGGGTGCAC AGTAA
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| Protein sequence | MRSDRVRLII SLALLVAAVV ALLLPGGRQA TGIAKLFSRI KLGLDLSGGV RLEYRVDIEK
GVENPSAVVD DVWTVLRNRL DSAGYTEAVV KKSFRENNSF IIVEIPDATD TSFAEKLVGS
TGLLWFGQAI DERDYDPTTN PDDVNLATRE GAQWYSDKDG KKWYLIKKEI NNRKDLVLSG
PRISEAVPTV DQKGVANYVV SFTLAREYVE VFKNITKELY VPEQVLNSGT TQYQMALKKR
LAIVLDDKVQ FVGFVVSPIE DGKGQIRGNF TFDEAKELAA ILRSGALPAR LEKTSASLVS
PLLGKDVLKQ SLNAGLIGAV LVIIYMLAFY GVMSFVAVIG IFYALALIFG FLAGTGAILT
LPGIAGIIFT IGTLVDGNII IYERIKEEIR GGKTPKAAIE VAFSRSFWTL FDANLTTIIA
ALFLYYFGTG TIKGFAITTI VGIFSAMFMN LVFSKFLLDA MAGAIRVRKT GGAQ
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