| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1265 |
|---|
| Symbol | |
|---|
| ID | 5453294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1364471 |
|---|
| End bp | 1369030 |
|---|
| Gene Length | 4560 bp |
|---|
| Protein Length | 1519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640875041 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001410769 |
|---|
| Protein GI | 154249944 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00244048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGGT TAATTAAATA CTTTATAGTT TTCTTGGTAC TTGTTTTTTT CAATACATTA
TTGTATTCAG AACTCTTAGA CGTAAGTTAT GTAACGTCGA CTAATGAGAT TGTAATTGTA
CTTTCTTTTT CGAAAGCGCC TAATGTTTTA TATTATGGTA AAAACGAGAG TAGAACTGTT
CATTATTTCC TTATTGATGA TTTTGCAAAA GGATCAATTT ACTTACCTAT TTCAATAGGT
AGTACTGAGG GCGTTCAAAT AGTTCCAATA GACGGAAAAG TCAATGCTTT TGTTTATACT
TTAACTCCAG GAAGTGTTAA GTACAATACC ACAGGTACTA AATTGTATAT AAGATTGCCA
TATAGTATGT CTTCAAAAAG GTTAACCGCA AGTTTTGCAA ATATAAAGAG TGATATTTTA
ATAAAAGATG TTGCCGAGTT TTTTGGAATT AAGGTGGTTC TTTACGACGG AGCCAAGGAT
AAGTCCGTAA GCATTAAGCT AGATAACTCT TCTATTGAAG ATGTAATCAG AACAATTTTA
ACTGCTGCCA ATCTTTCTTA CGCTTACGCT TCTGACCAAG TTATGTATAT TGGAAGCAAG
GAGGAAATTC AAAAGAATTT TGCTGTTTTC TGGCAAGTTT ACGATGCGCA AGTGAATGTT
GAAAAATTGA GAGAAGTTTT AAGTGCTGGA TCTTATTTGG GTTTAACCAG AGATAAATCA
AAAGTTTTCA TCTATGGTGG AGTTAATGAA TATAAAATGA TAGCTGAAGC TCTGGTGCCT
ATGAAAGTTC AAGATTGGTA CTATATTTCA TACAATGTTT CAGACAAAGA TATTGAGGAA
GCGCTTTCTC AAATTTCAAA AATATATGGG TTTACAACAG ATGATTATGT GATTTTAAAA
GAACAGAAAA AAATAGCTGT TAAAACATCA AAACCTTTAG AAGTAGAGAA TTTACTAAAA
CAAATTATGG CAAGAATTCA GCAACGCAAG TGGTACTATA TTCAATATAA CATTAGCGAA
GATGAGCTTA GCTCTCTAAT TACTTCTTTG CAAAAGATAT ACGATATAAA AGATTTTGCG
ATTCTTCAAT CAGATAAGAA GCTAGCCATA TTGGTTGATG ATGCTTCTAT AGTTTCTCAA
GTTGAAAAAA TAATTAAAAG CGCCGAGTCT AAAGTCACTC AACTATCAAC AACAGTAACA
TATATACCTG TTGATGTGAA TTATCCTGAA AGAGTTCAGG CAGTTTTAAA AGAAATTTAT
CCAAATTCTA ACCCCAAAGT GGTTTCGGGC AAGTTGTATG TTGTTTCTGG TTATGAAAAA
ATTGCCTTGT CACTTTCAAA AGAATCATAC ATTGGAAATC CTTGGAAAAT TGTAATTGAT
GACGTTCCAG AAAATGTTGT AATTTCAATA CTCAAATATA TCGGCGTCTT GGAAAATGAT
TTCGATATGA AAACAATAGA AAATAAAGTT ATCGTAAATC TTTTTTCTAG CGAAGATACT
TACAAGAAAT TTTTGAAATA TGTAGATGTT TTAGGTGAGT CAACCTACAT TGTAAAAGCT
GATGAAAATT TCTTAAAGAA ATTTAAAGTT ACTATTTTGC AAAACTTTTC AGATGGTACA
AAGTTAGTTC AAGGAAGGAT TAATGAGATT GAAAGACTTA AAAAATCCAT TTCTGAGGAG
ATTACAAATT TTGCAATTCA GAAGATTCCT ACAGATCCTC CAGCAGAGGT TATATCCAAA
TTAACAGGCT ATGTTGTTGA GGATAAAGAT AAATATTTTA TAGTAACTGT TAGTAAATCT
GAAATTGAAA CTGCGAAGAC TACTATTGAG AAAGTTAGAA AAGATTATGG TAACACAATG
ATTATATTGC CTGACAAATA CAAATCAGAG GCTAAAAAAG CCGTTGAAGA TATATACAAT
GTTAAGGTAT ATCAAATTGG AGAAAGTATA GTTTTACAAG GTTCTCTTGT AAATGACGCA
AAGAAATTTT TGGAAAACTT TGTTCAAGAA TCTGAAAATA TAGTTGAAAT ACTAGGAAAA
ATAGAACCAA ATTCATCTAA AATGCTAGGA GAATTGTTTA ATGTTAAATT ATACCAAGCT
GGTGATGTTT CGTATATAGT AGGTACACCT TCAAATGTAT CTAGAGCAAA AGAATATGCT
AAATTGATTG AAAGTGTAAG CGTTGATTTA TCGTTTAAAG TAGGACAAAA TCATATAGAT
TACCTAAAGA AAGTATATAA CGTTGAGATT GATTATTTCC CTGATATAAA TAAAATGGTT
GTCACAGGAT TAAAAGAAAA CGTGGCAGAA GCCGTAAGTT ATCTAAACTC GCTAAATCCT
TCAGATTCAT TATTATCGAT GGTATTACCG CAAAATTTGA AGAAAGAAGA AATTGATAAG
CTTTCCAAGT TAATTGCACC AAGTGTTGAG ATAGAACAAG TAGGGAATAT AATTTACATA
AATGGAGAAA TAAAAGATGT AGAGAAAATT AAGCAAGAGA TTGAAAAATT GTCTATAACC
CCTGAAAGGA AATATTTATT TATAGATTAT CCAGATAGTT TTGATAGTGT TATAAAGACT
TTATACAACG TTGAAACTTA CAAAACATCG CAAGGCTATG TTGTGTTTGG AACAAATGAG
CAACTTGAAA ATGTAAAAAA ATTCGTATCT GAGAACTCTG TTTTAGATAA ATCCTACACA
TTGTTAAATT ATCCGGAAGA ACTTGATAGC TTGATAAAAG AATATTTTAA CGTTAAAACT
TATAAAGTTT CTCAGGGATT TATTGTCGTT GGGTCAAAAG AGGAAATTGG TAAAGTTAGC
AAATTTATAG GCGAAATATC TTTAGAGCAA GGCAAAGAAT ACAGTCTTGT TGACGATAAA
CTCTTAATAG ATGTTAGCAA TAAAAATATA AAAGATGTTA TAATAACCGT TGGCAGGTTA
TTTAAACAAC AGTTCGTTTT GGTTGATGAT ATAAAATCTA CATGTTCTAT GAGAACGGTA
GTTTCAAATT TCCAAGAATT TTTAGATAAG TTATCATCTT ATAATATAAC TTATGAATTG
AAAAATGATA CTTATTATAT TTCAATCATG AAAACACAGC AAAGTACAAC AACTGCAAAC
CAGGTTGTAA AAGAAGAAAT TAAAACAGAA CCTGTTGTTG TTAAAGATGG GCTTATAACT
ATAAATGTTT CTAATATGCC TGTTGATGAT ATCATCACCC AAGTTATGGT TAAACTTAAC
AAGTCTTATA AATTAGAGAA AATAGGTGCT AGTATAAGTT CCATGTATCT AAAAGATATT
AATTATGAAA CTTTCAAAGA AACATTTTCA ACCTGGGTTA ACTTTACAGA AGTAGGAAGC
ATAACTTACA TTACACCTAA GGGCGTTATT AATAATAAGA CAGACTCAAA AAAGGCGTTT
GTTAAGGATG GATTGATAAA TTTAAAGATA GATAACGAAC CTATTTCACA AGTTATTCAA
ACTATTTTTG ATGAACTTGG ATATCAAGTG GTCTTTGCAA AACCAATAGA TAGAACAGCA
ACAATGTCAG TTTCTGGGAT TGACTTTGAA ACATTTAATT CAATAATGCT GAATTATGGG
ATATCAATCA AAAAATCTGG GAATGTCTAC ATTGTAGATA CAACACCAGA TGCAACTAAA
GTACAAACAA CTTACACATT TAATGTTCCA AGAAACACTG ATAAAGTTGA AGAACTTATA
AAATTTTATG GTGGAAAGAC AATGGTAAGT CCTTCTGCAG GTATAATTGT TGCTTATGAC
CTTGATCCTA AGAACGTAGA TGATATTAAC AAATTAATTG AAAAGTTTAC AACTCCAAAG
ATAGTTTCTA TCGATGCGCG AATAATAGAC GAATCAAGAA ATGGTTCACT TTCAGAAGAA
ATTGTTACAT TACTAAAAGC TGGAAATTAT CTAACATTTG GTTCAAATGG TTTAACTCTT
AATGTAAGCT TACTTGATAT TTTAGATGGT TCGATAATTG ATAAGATATT AAACGAAGCT
GGAATTTCAC TTGATCTTCG CGGGGCGGAA CAAGGTACTC CTTTCAGAGC AACCAGTGGT
ATTGGAAAAC TTTTGGCAAA TCCAAATATA ATGACAAAAA GTGGCGAAGA AGCACGAATA
TTTATTGGTG ATTCGATACC TTTGAAAATT GTAAGTACTT CTGGAGGACA AACCAATGAA
CAAGTAATAA GCCTTGAAGG AGGAATAGAA CTAAAGATAG TTCCATATGT AAACGCAGAT
AACACTATCG ATCTTGTAAT TACAACTTCT GTAAGTAATT TTGATTACTC TGTTTTAGTA
AACGGACTTC CAAAAATTAA CAAACGAGAT GCTAGCACAA AAATAACAAT TAAAGATGGT
CAGACACTTG TTATTGGCGG CCTTTCAAGG GAAGAAAAGA GCAAGTCGGA ATGGAAAGTA
CCAATCCTTG GAGACATACC AATTCTTGGG TACCTTTTCA GAGGAACGAA AGAAGCTTCA
GAACAAAGAA GCATAACGAT ATTCTTAACA GCAAAAATAG TTGATATTAT GAAAGAATAA
|
|---|
| Protein sequence | MNRLIKYFIV FLVLVFFNTL LYSELLDVSY VTSTNEIVIV LSFSKAPNVL YYGKNESRTV
HYFLIDDFAK GSIYLPISIG STEGVQIVPI DGKVNAFVYT LTPGSVKYNT TGTKLYIRLP
YSMSSKRLTA SFANIKSDIL IKDVAEFFGI KVVLYDGAKD KSVSIKLDNS SIEDVIRTIL
TAANLSYAYA SDQVMYIGSK EEIQKNFAVF WQVYDAQVNV EKLREVLSAG SYLGLTRDKS
KVFIYGGVNE YKMIAEALVP MKVQDWYYIS YNVSDKDIEE ALSQISKIYG FTTDDYVILK
EQKKIAVKTS KPLEVENLLK QIMARIQQRK WYYIQYNISE DELSSLITSL QKIYDIKDFA
ILQSDKKLAI LVDDASIVSQ VEKIIKSAES KVTQLSTTVT YIPVDVNYPE RVQAVLKEIY
PNSNPKVVSG KLYVVSGYEK IALSLSKESY IGNPWKIVID DVPENVVISI LKYIGVLEND
FDMKTIENKV IVNLFSSEDT YKKFLKYVDV LGESTYIVKA DENFLKKFKV TILQNFSDGT
KLVQGRINEI ERLKKSISEE ITNFAIQKIP TDPPAEVISK LTGYVVEDKD KYFIVTVSKS
EIETAKTTIE KVRKDYGNTM IILPDKYKSE AKKAVEDIYN VKVYQIGESI VLQGSLVNDA
KKFLENFVQE SENIVEILGK IEPNSSKMLG ELFNVKLYQA GDVSYIVGTP SNVSRAKEYA
KLIESVSVDL SFKVGQNHID YLKKVYNVEI DYFPDINKMV VTGLKENVAE AVSYLNSLNP
SDSLLSMVLP QNLKKEEIDK LSKLIAPSVE IEQVGNIIYI NGEIKDVEKI KQEIEKLSIT
PERKYLFIDY PDSFDSVIKT LYNVETYKTS QGYVVFGTNE QLENVKKFVS ENSVLDKSYT
LLNYPEELDS LIKEYFNVKT YKVSQGFIVV GSKEEIGKVS KFIGEISLEQ GKEYSLVDDK
LLIDVSNKNI KDVIITVGRL FKQQFVLVDD IKSTCSMRTV VSNFQEFLDK LSSYNITYEL
KNDTYYISIM KTQQSTTTAN QVVKEEIKTE PVVVKDGLIT INVSNMPVDD IITQVMVKLN
KSYKLEKIGA SISSMYLKDI NYETFKETFS TWVNFTEVGS ITYITPKGVI NNKTDSKKAF
VKDGLINLKI DNEPISQVIQ TIFDELGYQV VFAKPIDRTA TMSVSGIDFE TFNSIMLNYG
ISIKKSGNVY IVDTTPDATK VQTTYTFNVP RNTDKVEELI KFYGGKTMVS PSAGIIVAYD
LDPKNVDDIN KLIEKFTTPK IVSIDARIID ESRNGSLSEE IVTLLKAGNY LTFGSNGLTL
NVSLLDILDG SIIDKILNEA GISLDLRGAE QGTPFRATSG IGKLLANPNI MTKSGEEARI
FIGDSIPLKI VSTSGGQTNE QVISLEGGIE LKIVPYVNAD NTIDLVITTS VSNFDYSVLV
NGLPKINKRD ASTKITIKDG QTLVIGGLSR EEKSKSEWKV PILGDIPILG YLFRGTKEAS
EQRSITIFLT AKIVDIMKE
|
|---|
| |