Gene Fnod_1111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1111 
SymbolrpsD 
ID5452242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp1210110 
End bp1210739 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content38% 
IMG OID640874879 
Product30S ribosomal protein S4 
Protein accessionYP_001410615 
Protein GI154249790 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.99385e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACGAA ACACAGGGCC TTTGTGCAAA TTGTGTAGAA GAGAAGGAAT GAAATTGTAC 
CTTAAGGGTG AAAGATGCTT CAGCGAGAAA TGTCCATTTG ACAAGAGACC ATTCGCACCT
GGACAACACG GTAGAGAAAA GAAAAAACTA ACACAATATG CTCTCCAACT CAGAGCTAAA
CAAACAATGA AGAGAATTTA CGGAGTACTT GAGAAACAAT TTAGAATATA CTACGAAAGA
GCTGTCAAAC AATCTGGCGA TACCCGTGAA AACCTGGTAG CACAAGTTGA GAGAAGACTT
GATAATGTTG TTTACAGACT TGGATTCGCA ATTAACAGAA GAGCAGCAAG ACAACTTGTC
TCTCACGGAC ATGTACTTGT AAACGGGAAG AAAGTTGACA TCCCATCATA CCAAGTCAGA
CCAGGTGATG TTATTTCTAT AAAAGAAGGA AGCAGAACAA TAGAACCAAT CAAACAAGCA
ATAGAGCTAA ATAAAGGTAG AGCAATTTCA AATTGGCTTG AAGTTGATTA CGATCAATTT
AAAGGAGTAT ACGTAAGAAA TCCAAAATTA GAAGAAATTA TTGATCTCCC AGTTAACGTA
CAGGCTATTG TCGAATTCTA CTCGAGGTGA
 
Protein sequence
MARNTGPLCK LCRREGMKLY LKGERCFSEK CPFDKRPFAP GQHGREKKKL TQYALQLRAK 
QTMKRIYGVL EKQFRIYYER AVKQSGDTRE NLVAQVERRL DNVVYRLGFA INRRAARQLV
SHGHVLVNGK KVDIPSYQVR PGDVISIKEG SRTIEPIKQA IELNKGRAIS NWLEVDYDQF
KGVYVRNPKL EEIIDLPVNV QAIVEFYSR