| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0743 |
|---|
| Symbol | |
|---|
| ID | 5452151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 805691 |
|---|
| End bp | 807055 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640874490 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001410255 |
|---|
| Protein GI | 154249430 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000193663 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATC GAAATATAGA ATTGCTGCTC GGAGATTACA GGAAAGCCAT TGTAAAGTTA
TCTATTCCAA ATATGATTTC CATGTTTGTC CAGACAATAT ATAACCTTGT TGACGCTATA
TGGGTTGCCG GACTTGGAGC TGTTACACTT GCAGCTATGG GATTTTTCTT CCCAATCTTT
ATGATTGTTG TTTCGATCGC GACGGGAATA ACTGTTGGAA CAAGTTCGGC TATTTCCAGA
AAGATAGGTG AGAAGGATTA CGAAGGTGCA AATTCCGTAG CGGAACATTC GATCTTACTT
TCGCTGATTG TTTCACTTTT TACAGTTTTA ATAGGTATCA CAACGTTGAT ACCTGTTCTT
AAAGGTATTG GCGCGAGTGG TGAAGCGCTT CAGAAAGCAT ATGATTATGG GTTTATAATT
TTTTTGTTTA CACCATTTCT AATGTTTAAC AACACCGCTG TAGGAATATT ACGTGGTGAA
GGTGATTCTA AAAGACCTAT GTATGCTGTA ACCTTTAGTT CTATATTGAA CATCTTTTTG
GATCCTATTT TTATATACAC ATTTAAATTG GGAATTAAAG GTGCTGCATG GGCAACTGGA
ATATCTATTA TATCAGCAAC GGTTATATTT ATCTATTATT TATTCTTTTC TGATAAAACT
TTTTTAAAGG TCTCTTTGAA GAAGTTTAGA TACAATGGTA AATATCTGCG AGATATTTCC
ATAGTTGGTT TTCCAACGGC GTTGGCTCAA ATAGCGATGT CAATTGCAAT TTACGTTTTG
AATAGATTTG CTGTGAAGGC TGGAGGGGAT GTTGGAGTTG CGACTTTTAC AGGGGCATGG
AGGATAATAA ACCTTGGTAC GTTGACTATT ATAGGTATTT CTTCTGCTGT AACACCCGTT
ACAGGTGCTG CTTATGGTGC TAGAAATGTA AAAAGGATAG AAGACGCGCT AAATTATGCT
ATAAAATTTG CGGAGATTTT TAGTTTAACC ATAATGTTAG GAATATTCAT CTTCTCAAAG
CAGTTAGCAT TTCTTTTTGC GTACTCAAAA GCCTCTAGTG AGTTACTTGA AAATATTTCT
CAAGCATTAA AAATTTTGTG TTTATTCTTG CCCGGTACTC CTCTTGGAAT GCTCACATCT
GGAATGTTCC AGGGAATTGG TCAAGGTTTT AAAAGTCTTG TGGCGACTAT TCTTAGAACT
ATCATATTCC AATTATTTTG GACATGGCTA TTTGTCGATG TTATAAAAAT AGGTTTGGTT
GGGGTTTGGT GGGGAATAGT TATCGGAAAT GCAAGTGCGT CGTTGGTTAC ATATACATGG
GGCAAGTTGT CGATCCAGAA ATTGTACGAG GAGTTTCAAG AATAA
|
|---|
| Protein sequence | MNNRNIELLL GDYRKAIVKL SIPNMISMFV QTIYNLVDAI WVAGLGAVTL AAMGFFFPIF
MIVVSIATGI TVGTSSAISR KIGEKDYEGA NSVAEHSILL SLIVSLFTVL IGITTLIPVL
KGIGASGEAL QKAYDYGFII FLFTPFLMFN NTAVGILRGE GDSKRPMYAV TFSSILNIFL
DPIFIYTFKL GIKGAAWATG ISIISATVIF IYYLFFSDKT FLKVSLKKFR YNGKYLRDIS
IVGFPTALAQ IAMSIAIYVL NRFAVKAGGD VGVATFTGAW RIINLGTLTI IGISSAVTPV
TGAAYGARNV KRIEDALNYA IKFAEIFSLT IMLGIFIFSK QLAFLFAYSK ASSELLENIS
QALKILCLFL PGTPLGMLTS GMFQGIGQGF KSLVATILRT IIFQLFWTWL FVDVIKIGLV
GVWWGIVIGN ASASLVTYTW GKLSIQKLYE EFQE
|
|---|
| |