Gene Fnod_0556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0556 
Symbol 
ID5451940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp613917 
End bp614855 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content34% 
IMG OID640874304 
ProductISCpe7, transposase 
Protein accessionYP_001410075 
Protein GI154249250 
COG category[L] Replication, recombination and repair 
COG ID[COG3316] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00138013 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTAATA TCCAACTCAA ATGCCCTCAT TGCGGCTCTT CTAACTTCAT CAAAAATGGT 
CATGATAAAT TCAAAAACCA AATCTTCTTT TGCAAAGACT GCAAGCGTTA CTTTAAACTT
TCTTTCACCA AAAAACACAA ACTTTTCTCT TTCCCTTACC CTCGTTGTGT TCATTGTAAC
CATGTCATGG AAATTTACAA AATCCGCCGT TATTTCGTTC GTTTCAGATG CAGAAAGTGC
AACTTCAAAA CTTCTGTTCC ACTTTCTCTT CCTCAGCCTG TGCCTTTCAA CTTTCATCCT
TTCAAATTCT TCCGTTTCCC TATCTATATC ATTCTCAAAG CTTTCATCTT GTACTTCAAA
TACAACCTTT CTCTTCGTGC TATTAAAGCT TGCTTGAATA TCAATGTCTC TCATGTCGCT
ATTTACAAAT GGATTATCAA GTTATCTTCT GTTATTTCGC TTTTTGAGTT TGAGAATGTA
TTTAAAGTTC ACGGTGATGA AACAGTTATT GTATTTCGAG ACAAAAAGTA CTATGTGTGG
CTATTAGTTG AGCATGGTAC GAATTTAATA GTAGCTTGGC ATGTATCAAG ATATCGTGAT
ATGTCACAAG TTAAGATATT GTTAGATAAA TACTTTAGTC AAAGAAAACA AAACACACAA
ATAGAGTTAA TAACCGATGG ACTAAAAGCG TACGAGATAG CAGTGAAACT AAATTTTGAT
AATGTTGAGC ACAGAGAAGT AAGACTAGGT AAAAACAACG AATGTGAATC GAAATTTTCG
TTATTTAAGA TGTTTGTTAG AGCGAAAAGG AGCTTCAAGA AATTTAGCAA CATACGGTAC
TATGTAAATG GTTTTTGTGT AGTAAGGAAC CTATGCAAGT TATATGAGAA CGAAAATGAG
ATGATTACAG CTTTAGCTTC CATCATCACT ACTAGTTAA
 
Protein sequence
MTNIQLKCPH CGSSNFIKNG HDKFKNQIFF CKDCKRYFKL SFTKKHKLFS FPYPRCVHCN 
HVMEIYKIRR YFVRFRCRKC NFKTSVPLSL PQPVPFNFHP FKFFRFPIYI ILKAFILYFK
YNLSLRAIKA CLNINVSHVA IYKWIIKLSS VISLFEFENV FKVHGDETVI VFRDKKYYVW
LLVEHGTNLI VAWHVSRYRD MSQVKILLDK YFSQRKQNTQ IELITDGLKA YEIAVKLNFD
NVEHREVRLG KNNECESKFS LFKMFVRAKR SFKKFSNIRY YVNGFCVVRN LCKLYENENE
MITALASIIT TS