| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0504 |
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| Symbol | |
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| ID | 5453217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | - |
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| Start bp | 548607 |
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| End bp | 551810 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640874253 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001410025 |
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| Protein GI | 154249200 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTACA AACTTGACGA AGAACATTAT GTTGAAAATT CATTCCTCTT TCACCTTCAA
AGGCTTGGAT GGAAGATTTA TAGACAAAAC AAAGATAACC CTGAGGATAC AAAAGAAATA
ATATCGTTCA CTTCTTCATT AGAACCTGAA TATGGTGAAA GCCAAAAATT CAGAGAAAGC
TTTAAAGAAG TAATCCTTGA GGGAGTTTTA AGGGAGTCTT TAAAGAGAAT AAACCCATGG
ATAGAAGATG ACCAAATAAG TGAAGTTGTT CGAAGAATTA TAACACCACA GTCAAACTCT
CTTTTAGAGG CAAATAAAGA AATCCATGAC TTGCTTTTAG AGAACACCTC AGTTTCTGAA
AATAGAAAAA CAGGAGAAAA AAGCCCAACT GTTAAGTTTA TTGATTTTAA AAATCCGGAC
AATAATTCAT TCATTGCTAT ATCACAGTTT AAAGTGAATA TAACGGGAAC TGAAAAACAT
ATTGTTCCCG ATATAGTTCT TTTTGTAAAT GGTTTGCCTC TTGTGGTGGT TGAATGCAAA
TCTCCAGCAG TTGCTGACCC AATTTCTGAA GCAATTACTC AGCTTATGCG CTATTGTAAC
AGACGTGGCG TAAGTGAGGG AAATGAAAAG CTTTTCTGGT ACAACCTATT TGTAGTAGCT
ACATCCAATC AGGTCGCAAA GTATGGCACA GTAACCTCAG AGTATGAGCA CTTTGTTGAG
TGGAAAGACC CTTATCCTTT TTCATTGTCA GATGTAAATC CAGATGGAAA TGTAACAAGC
CAGCAAGTTT TGATTCATGG TATGCTTTCA AAAGAAAACC TTCTTGATTT GCTCCACACA
TTCACCATCT TTAAGGAAGA TCCAAAGAGT AAAATGGTAA AGGTTGTTGC GAGATATCAG
CAATTTAGAG CGGTAAAGAA GATGGTAAAA AGGTTAAAAG AAGGTAAAAC ACCGGACGAA
AGAGGGGGCA TAGTTTGGCA TACCCAAGGT TCAGGTAAGT CTTTGACAAT GATGTTTATG
GTTCGCGAGT TATATCATAA TCCTGAGTTT GGGAATTACA AAGTTGTTTT TGTTACAGAT
AGAAGAGATC TTGAAAAGCA GTTGAATGAA ACATCAAAAA GTGTGGGTTT TACTGTTAGG
TTAGCTAGAA GCATTAATGA ACTCAAAGAG CTTTTAAAAA CTAACACACC AGAACTTGTT
ATGGCTATTG TTCATAAATT TCAAGAGAGG GAATTAGAAG GAGAATTTCC TGTATTAAAT
ACATCATCTA ATATTCTAAT AATGATAGAT GAGGCACACA GAACTCAATA CAAGTTGCTA
GGCGCAAATT TAAGAAAAGC TCTTCCAAAT GCAACAAAAA TAGCGTTTAC AGGTACACCT
ATAGAAAAGA CTGAGATAAC ATTTGGCGAT TATATAGACA AGTACAGCAT AAAACAGGCA
GTTGAAGATG GTGTAACCGT TGATATTGTA TATGAAGGAA GAGTTCATAG TGCGGAGATT
TCAGATGAAG AAGCGGCAAA TGCAAAATTT GAGGATGTTT TTAGCGACGC TGATAAAGAT
ACTAAGAGAA TGATAATGGG AAAATTCGTA TGGAAAGCAT ATCTCGAAGC GGAAGAGGTA
ATTCGTGACA AGGCTAGAGA TATGATAGAA CATTACATAG CTCATATATT CCCAAATAAA
TTTAAAGCCC AGGTTGTTAC GGCATCGCGT CTTGCAGCGA TAAGGTATAA AAGAGCGCTT
GAAGAATCTC TCAAGGAGAA AATTTTTGAA TTGGAAAAAG AAAATAACTC AAAAATAGAT
TTAGAAACGT TGAAAAAATT GGAAGTTGGA GTGGTTATTT CAGGTGCTCA AAATGATCCA
CCTGAGTATC GTAATTACAC AGACCCCAAT GAGCACGAGA GAATAATAAA AAGTTTTAGG
CTTCCATTTG ACAAGGTAAA TGAAAATGGT ATCAGTGGAA ATGTTGGTAT TTTGGTTGTT
CAAAACATGC TGATAACTGG TTTTGACGCA CCTATAGAGC AAGTTATGTA TCTTGATAAT
GTGATTAAAG GACATAACTT GCTACAAGCT ATTGCAAGAG TGAATAGAGT TTATAAAAAT
AAGTCATGTG GTTTTGTTGT AGACTATGTA GGAGTTCTAA AACATTTAAA AGAGGCTCTG
GCTATTTACG CTGATGAGGA TATCGAAGAA ATTTCACAGG TTGTAAAGGA CAAAGCAAAA
AGCATCGATG AGTTAAAGTA TGTTCATAAT CTTATTGAAG AATTTTTTAA AAAACATGGC
ATTAGAAATT GGCGTGAGGA TATAGATGAG TGTATTGATA TTCTTGTTGA TAAAAATATT
AGAAACGAGT TTATAGCTCT TGTTAGGCGG TTTAATCATT GTATGGACGA GGTTCTTCCT
GACTTCGCAG CATTAAAATA CCTTACTGAC TTGAAAATTC TTGCTTTCAT AAAAGAGTCA
GCACGAAATG TATATAGAGA TGATAAGTTA AGCATAAAAG ATGCAAGTAA TAAGATAAGA
GAAATTGTTG AAGAGTATCT GATTTCAAAA GGGATAGATC CCAAAATACC ACCTACTCCT
CTTTTAGAAG ACAAGTTTTT AGAAAAGCTT CATAGAAAAA CAAGTAAAGT AAAAACTCAA
GAACTTAAGA ATGCAATCAT TGAACATATT GAAGAATATT GGGAAGAAGA CCCAGAATTT
TATGAAAGAT TTTCTGATAG ATTGAAGAAG ATACTTGAGG AGTATAAGGA AAATTGGGAT
GCTCTATATG AAGAACTTAA GAAATTAAGA GAAGAAGTTA AAAAAGGTAG AGAAGTTGAA
CAAACGTTTG GATTTGAACC TAAGAAGGAA ATGCCATTTT TTGGTTTGAT TAAAAGTGAA
ATATTTGGTA AAAAAACTGT TAACGAATTA ACTGATAGTG AAATAGATTT TCTTGTTAAT
ACAACCAGAG ATGTTATAGA GATAATCAAA AGAGAAGTTC AAAAAGTTGA CTTTTGGGAA
AATCCAACGA AACAAAATAA TCTTAAATCA TATCTAACCA GGCATTTGAT TAAACTATCA
TCTCCAGCTT TTAAAAGAAA ACATGAAACT GTAAGTGAAG AACATGAACC ATATATGGCT
GATATCAAGA ATATTGTACA CAAAAAAAGA AATGAAATTG CTCAGAAACT AATAGAACTT
GCTTATTATC ACTTTAGGAA GTGA
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| Protein sequence | MFYKLDEEHY VENSFLFHLQ RLGWKIYRQN KDNPEDTKEI ISFTSSLEPE YGESQKFRES
FKEVILEGVL RESLKRINPW IEDDQISEVV RRIITPQSNS LLEANKEIHD LLLENTSVSE
NRKTGEKSPT VKFIDFKNPD NNSFIAISQF KVNITGTEKH IVPDIVLFVN GLPLVVVECK
SPAVADPISE AITQLMRYCN RRGVSEGNEK LFWYNLFVVA TSNQVAKYGT VTSEYEHFVE
WKDPYPFSLS DVNPDGNVTS QQVLIHGMLS KENLLDLLHT FTIFKEDPKS KMVKVVARYQ
QFRAVKKMVK RLKEGKTPDE RGGIVWHTQG SGKSLTMMFM VRELYHNPEF GNYKVVFVTD
RRDLEKQLNE TSKSVGFTVR LARSINELKE LLKTNTPELV MAIVHKFQER ELEGEFPVLN
TSSNILIMID EAHRTQYKLL GANLRKALPN ATKIAFTGTP IEKTEITFGD YIDKYSIKQA
VEDGVTVDIV YEGRVHSAEI SDEEAANAKF EDVFSDADKD TKRMIMGKFV WKAYLEAEEV
IRDKARDMIE HYIAHIFPNK FKAQVVTASR LAAIRYKRAL EESLKEKIFE LEKENNSKID
LETLKKLEVG VVISGAQNDP PEYRNYTDPN EHERIIKSFR LPFDKVNENG ISGNVGILVV
QNMLITGFDA PIEQVMYLDN VIKGHNLLQA IARVNRVYKN KSCGFVVDYV GVLKHLKEAL
AIYADEDIEE ISQVVKDKAK SIDELKYVHN LIEEFFKKHG IRNWREDIDE CIDILVDKNI
RNEFIALVRR FNHCMDEVLP DFAALKYLTD LKILAFIKES ARNVYRDDKL SIKDASNKIR
EIVEEYLISK GIDPKIPPTP LLEDKFLEKL HRKTSKVKTQ ELKNAIIEHI EEYWEEDPEF
YERFSDRLKK ILEEYKENWD ALYEELKKLR EEVKKGREVE QTFGFEPKKE MPFFGLIKSE
IFGKKTVNEL TDSEIDFLVN TTRDVIEIIK REVQKVDFWE NPTKQNNLKS YLTRHLIKLS
SPAFKRKHET VSEEHEPYMA DIKNIVHKKR NEIAQKLIEL AYYHFRK
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