| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4833 |
|---|
| Symbol | |
|---|
| ID | 5420560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009717 |
|---|
| Strand | + |
|---|
| Start bp | 41338 |
|---|
| End bp | 44508 |
|---|
| Gene Length | 3171 bp |
|---|
| Protein Length | 1056 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640873501 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001409281 |
|---|
| Protein GI | 154243708 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0831528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCC GCCTCATCGC ATGGTCGGCG CGCAACCTGG TGCTGGTCCT CGTGGGCACG
GCCTTCGCGG TCGCCGCCGG CCTCTATGCC CTGCGCACCT TGCCGCTGGA CGCGCTGCCC
GACCTCTCCG ACGTGCAGGT GATCGTCTAT ACGGACTATC CCGGCCAGGC GCCGCAAGTG
GTGGAAGACC AGGTCACCTA TCCCCTTTCC ACCTCCATGC TCACGGTGCC GAGATCCAAG
GTGGTGCGCG GCTTCTCCTT CTTCGGCGCC TCCTTCGTCT ATGTGATCTT CGAGGACGGC
ACCGATCCCT ATTGGGCGAG GAGCCGCGTG CTCGAATATC TCAATGCCGC CGCGCGCCGC
CTGCCCGCGG GCGTGACCCC GAGCCTCGGC CCGGATGCCA CCGGCGTCGG CTGGGTCTAC
CAATATGCCG TGGTGGCCAA GCAGATGACG CTGGCCGAGC TGCGCTCGCT GCAGGATTGG
GTCATCCGCT TCGCCGCCGC GAAGGCGGAG GGCGTGGCCG AGGTGGCGAG CGTTGGCGGT
TTCGTGAAGC AGTACCAGAT CGTGGTGGAT CCCAACCGCC TGCGGGCGCT GGGCATTCCG
CTGGAGCGGG TGCGCGCCGC GGTGGCGGCG AGCAATGCGG ATGTGGGCGG GCGCACGGTC
GAATTGTCCG AGTTCGAGTT CATGGTGCGC GGCCGCGGCT ATCTCAGGAG CGTCGCCGAT
ATCGAGAACG TGGTGCTGAA GACCGACCGC GGCGTGCCGC TGCGGGTGAA GGACGTGGCG
CGGGTGGAGA TCGGCCCCGA CGAGCGGCGC GGCATCACCG AGCTCGACGG CGAGGGGGAG
GTGGCGAGCG GCATCGTGTT GCAGCGCTTC GGCGCCAACG CCCTGGCCGT GATCGAGAAC
GTGAAGGCGC GGCTTGCGGA GATCGCCCCA AGCCTGCCGA AGGGGGTCGA GATCGTGCCG
GTCTACGACC GGTCCGAGCT GATCGGGCGG GCCATCGAGA CGCTGAAGGG CACGCTGGTC
GAGGAGAGCA TCATCGTCGC CCTCGTCTGC ATCGTGTTCC TGCTGCATCT GCGCAGCGCG
CTGGTGGCCA TCCTGATGTT GCCGGTGGGC ATCCTCATGG CCTTCGCCGC CATGAAGGCC
ATCGGCCTCG GCTCCAACAT CATGAGCCTG GGGGGCATCG CCATCGCGGT GGGGGCCATG
ATCGATGCCG CCATCGTCAT GATCGAGAAT GCCCACAAGC ATCTGGAGCG CGCGCCGGAG
GGCAAGCCGC GGGTGGAGAT CCTGGTCGAG GCCGCGAGCG AGGTGGGGCC GGCCTTGTTC
TTCAGCCTGC TGGTGATCAC CGTCTCCTTC CTGCCCATCT TCACCCTGGA GGCGCAGGAA
GGCCGGCTGT TCGGCCCGCT CGCCTTCACC AAAACCTTCG CCATGGCGGC GGCGGCGCTG
CTTTCGGTGA CGCTGGTGCC GGCCTTGATG GTGGTGTTCG TGCGCGGGCG GATCATTCCG
GAGCACCGCA ATCCCATCAA CCGCGCCCTC ATCTTCGTTT ATCGCCCCGT CATCCGCACG
GTGCTGAAGG CGAAGACGCT CACCATCCTC CTCGCTCTGG TGGTGCTGGG CGTCACCGCG
TGGCCCGCCC GCCAGCTCGG CTCCGAATTC ATGCCGAGCC TCGACGAGGG CACGCTGATG
TACATGCCCA CCACCCTGCC GGGCCTGTCC GTCACCAAGG CCGCCGAGCT GCTGCAGATG
CAGGACCGCA TCATCAGGTC GTTTCCTGAA GTTGCCTCGG TCTACGGCAA GGCGGGGCGG
GCGATGACGG CCACCGACCC GGCGCCGACG GAGATGTTCG AGACCATCAT CAACCTGAAG
CCGAAGGATG AGTGGCGCCC CGGCGTCACC CTCGACAGCC TGAAGGCGGA GATGGACAAG
GCCTTGCAGT TTCCGGGCGT CTCCAATGCC TGGACCATGC CCATCCGCGC GCGCATCGAC
ATGCTCGCCA CCGGCATCCG CACGCCGGTG GGCGTGAAGG TGTTCGGCAC CGACCTGACG
CAAATGGAAC AGGCCGCCCG GGCCATCGAG CAGGTGCTGC GGGCCGTCCC GGGCACCTCC
AGCGCCTATG CGGAGCGGGT GATCGGCGGC TATTATCTCG ACATCGTGCC GGACCGCGAG
GCCCTCGGCC GCTACGGGCT CATGGTGGGC GACGTGCAGG CGGTGATCGC CACCGCCCTT
GGGGCCGAGC AGGTGACCAC CACGGTGGAG GGCCGCGAGC GCTATGGCGT CACCGTCCGC
TATCCCCGCG ACTTCCGCAG CGATCCGCAG GCCATCAGCC GCGATATACA GGTGCCTTTG
CCGGACGGCG GGACGGTGCC CCTCGCCGCG GTGGCGAAGG TGGAGCTGGC CCGCGGCGCC
ACGTCGATCC GCACCGAGAA CGGGCAACTG GCGGTCTATG TCTTCGTGGA TATCGCCGGC
CGCGATCTCG GCGGCTATGT GGCCGAGGCA AAGAGAGCGG TGGCGAGCGA GGTGAAGCTG
CCGCCCGGCA CCTATGTCTC CTGGAGCGGC CAGTTCGAAT ATCTCGAGCG CGCCGCCGCC
CGGCTGAGCA TCGTGGTGCC GGTGACTTTG CTCGTCATCT TCCTCCTGCT CTATCTCAAC
TTCCGGGCGC TCACCGAGAC CCTGATCGTG ATGCTGTCGC TGCCCTTCGC GCTGGTCGGC
GGCATCTGGC TCATGTGGTG GCTCGGCTTC AACCTCTCGG TGGCGGTGGC GGTGGGCTTC
ATCGCGCTCG CTGGCGTCGC CGCCGAGACC GGTGTCGTCA TGCTGATCTA TCTCGATCAG
GCCATGCGCG AGCTGAAGGC GGAGCGGGCG GCGAAAGGCC GGCCTTTCAC CCGGGCGGAC
CTCAACCGGG CCATCATGCT GGGGGCCGTC GAGCGGGTGC GGCCGAAGAT GATGACGGTG
GTCGCCATCA TGGCCGGGCT TTTGCCCATC CTGTGGAGCA CGGGCACCGG CTCGGAGGTG
ATGCAGCGCA TCGCCGTGCC GATGATCGGC GGCATGGTCT CCTCGACCGT GCTGACACTG
GTGGTGATCC CGGCCGTTTA CGCTTTGGTG AAGGGCTGGC GGCTGGGCGG GAGAGCCGCC
GACATGGCGG CGACCGGGCG GACGCCGGCC GGCCTCAAGG CGGCTGAATG A
|
|---|
| Protein sequence | MIARLIAWSA RNLVLVLVGT AFAVAAGLYA LRTLPLDALP DLSDVQVIVY TDYPGQAPQV
VEDQVTYPLS TSMLTVPRSK VVRGFSFFGA SFVYVIFEDG TDPYWARSRV LEYLNAAARR
LPAGVTPSLG PDATGVGWVY QYAVVAKQMT LAELRSLQDW VIRFAAAKAE GVAEVASVGG
FVKQYQIVVD PNRLRALGIP LERVRAAVAA SNADVGGRTV ELSEFEFMVR GRGYLRSVAD
IENVVLKTDR GVPLRVKDVA RVEIGPDERR GITELDGEGE VASGIVLQRF GANALAVIEN
VKARLAEIAP SLPKGVEIVP VYDRSELIGR AIETLKGTLV EESIIVALVC IVFLLHLRSA
LVAILMLPVG ILMAFAAMKA IGLGSNIMSL GGIAIAVGAM IDAAIVMIEN AHKHLERAPE
GKPRVEILVE AASEVGPALF FSLLVITVSF LPIFTLEAQE GRLFGPLAFT KTFAMAAAAL
LSVTLVPALM VVFVRGRIIP EHRNPINRAL IFVYRPVIRT VLKAKTLTIL LALVVLGVTA
WPARQLGSEF MPSLDEGTLM YMPTTLPGLS VTKAAELLQM QDRIIRSFPE VASVYGKAGR
AMTATDPAPT EMFETIINLK PKDEWRPGVT LDSLKAEMDK ALQFPGVSNA WTMPIRARID
MLATGIRTPV GVKVFGTDLT QMEQAARAIE QVLRAVPGTS SAYAERVIGG YYLDIVPDRE
ALGRYGLMVG DVQAVIATAL GAEQVTTTVE GRERYGVTVR YPRDFRSDPQ AISRDIQVPL
PDGGTVPLAA VAKVELARGA TSIRTENGQL AVYVFVDIAG RDLGGYVAEA KRAVASEVKL
PPGTYVSWSG QFEYLERAAA RLSIVVPVTL LVIFLLLYLN FRALTETLIV MLSLPFALVG
GIWLMWWLGF NLSVAVAVGF IALAGVAAET GVVMLIYLDQ AMRELKAERA AKGRPFTRAD
LNRAIMLGAV ERVRPKMMTV VAIMAGLLPI LWSTGTGSEV MQRIAVPMIG GMVSSTVLTL
VVIPAVYALV KGWRLGGRAA DMAATGRTPA GLKAAE
|
|---|
| |